Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1126

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460316 to 462771 9493 mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463118 to 466210 9494 mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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462,296 + 9493 mRNA_1125 0.81 2.1
462,310 - 9493 mRNA_1125 0.81 -1.5
462,313 + 9493 mRNA_1125 0.81 -2.0
462,422 + 9493 mRNA_1125 0.86 -0.2
462,428 + 9493 mRNA_1125 0.86 -3.1
462,444 + 9493 mRNA_1125 0.87 -0.5
462,574 + 0.2
462,741 + -2.8
462,902 + 1.0
462,906 + -1.0
463,049 - -1.8
463,138 + -0.3
463,281 - -1.8
463,290 + -1.9
463,343 - -0.8
463,723 + 9494 mRNA_1126 0.20 -2.4
464,133 - 9494 mRNA_1126 0.33 -1.4
464,252 - 9494 mRNA_1126 0.37 1.0
465,236 - 9494 mRNA_1126 0.68 -0.6
465,244 - 9494 mRNA_1126 0.69 -3.8
465,853 + 9494 mRNA_1126 0.88 -0.5
466,275 - 0.7
466,276 + -0.1
466,280 + -1.9
466,284 + -2.3
466,285 + -1.0
466,286 - -1.6
466,286 + -2.6
466,286 - -1.7
466,359 + -2.4
466,359 - -0.4
466,362 + -1.0
466,362 - 0.8
466,362 + 0.8
466,368 - -2.5
466,370 - 1.1
466,371 - -1.2
466,373 + -4.2
466,374 - -3.6
466,387 + -1.0
466,392 + -3.8
466,412 + -2.9
466,422 - -1.9
466,819 - -1.3
466,933 + -1.7
466,951 - -0.6
466,965 + 9495 mRNA_1127 0.10 1.0