Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1122

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450183 to 453173 9489 mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453460 to 456260 9490 mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456532 to 457918 9491

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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452,812 - 9489 mRNA_1121 0.88 -4.0
453,074 - -0.2
453,082 + -1.4
453,113 - -1.6
453,228 + -0.1
453,243 - -0.3
453,244 + 0.6
453,250 + -1.5
453,252 + -1.1
453,366 + -1.6
453,367 - -1.7
453,368 + -2.1
453,368 - -1.5
453,372 - -1.2
453,372 + -0.9
453,373 + 0.4
453,375 + -3.7
453,375 + -2.4
453,377 - -1.8
453,378 + 1.1
453,378 - -1.5
453,384 + -1.9
453,391 + -0.5
453,411 + -2.6
453,548 + -1.9
453,600 + -0.8
453,649 + -3.3
453,667 - -1.4
453,814 - 9490 mRNA_1122 0.13 -0.9
453,816 + 9490 mRNA_1122 0.13 -2.2
453,819 - 9490 mRNA_1122 0.13 -3.1
453,822 - 9490 mRNA_1122 0.13 -3.8
453,829 + 9490 mRNA_1122 0.13 -3.4
453,833 - 9490 mRNA_1122 0.13 -2.1
453,836 + 9490 mRNA_1122 0.13 0.3
453,968 - 9490 mRNA_1122 0.18 -2.6
453,973 - 9490 mRNA_1122 0.18 -2.9
453,979 + 9490 mRNA_1122 0.19 -0.4
453,999 + 9490 mRNA_1122 0.19 -2.1
454,007 + 9490 mRNA_1122 0.20 -2.1
454,014 + 9490 mRNA_1122 0.20 -0.9
454,016 - 9490 mRNA_1122 0.20 -0.4
454,027 - 9490 mRNA_1122 0.20 -3.4
454,032 + 9490 mRNA_1122 0.20 -1.8
454,083 - 9490 mRNA_1122 0.22 0.1
454,470 + 9490 mRNA_1122 0.36 -1.1
454,617 + 9490 mRNA_1122 0.41 -1.1
454,873 - 9490 mRNA_1122 0.50 0.5
454,884 - 9490 mRNA_1122 0.51 -1.9
455,227 + 9490 mRNA_1122 0.63 -0.6
455,294 - 9490 mRNA_1122 0.65 -1.0
455,311 - 9490 mRNA_1122 0.66 -1.1
455,316 - 9490 mRNA_1122 0.66 -3.0
455,448 + 9490 mRNA_1122 0.71 0.3
455,629 + 9490 mRNA_1122 0.77 -0.6
455,726 - 9490 mRNA_1122 0.81 -2.7
455,751 + 9490 mRNA_1122 0.82 -1.9
456,001 + -1.5
456,020 - 0.1
456,149 + -2.3
456,214 - -1.9
456,545 - -2.4
456,625 - -2.1
456,781 - 9491 mRNA_1123 0.18 -1.3
456,866 + 9491 mRNA_1123 0.24 -1.6
456,899 + 9491 mRNA_1123 0.26 -2.1