Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1121

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448801 to 450033 9488 mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450183 to 453173 9489 mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453460 to 456260 9490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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449,275 - 9488 mRNA_1120 0.38 -2.3
450,208 - -1.2
450,394 - -2.7
450,476 + -1.4
450,627 + 9489 mRNA_1121 0.15 -0.9
450,667 - 9489 mRNA_1121 0.16 -1.8
451,224 - 9489 mRNA_1121 0.35 -3.0
451,308 + 9489 mRNA_1121 0.38 -2.3
451,463 - 9489 mRNA_1121 0.43 -2.9
452,061 - 9489 mRNA_1121 0.63 -1.6
452,140 + 9489 mRNA_1121 0.65 -1.2
452,255 + 9489 mRNA_1121 0.69 -1.9
452,812 - 9489 mRNA_1121 0.88 -4.0
453,074 - -0.2
453,082 + -1.4
453,113 - -1.6
453,228 + -0.1
453,243 - -0.3
453,244 + 0.6
453,250 + -1.5
453,252 + -1.1
453,366 + -1.6
453,367 - -1.7
453,368 + -2.1
453,368 - -1.5
453,372 - -1.2
453,372 + -0.9
453,373 + 0.4
453,375 + -3.7
453,375 + -2.4
453,377 - -1.8
453,378 + 1.1
453,378 - -1.5
453,384 + -1.9
453,391 + -0.5
453,411 + -2.6
453,548 + -1.9
453,600 + -0.8
453,649 + -3.3
453,667 - -1.4
453,814 - 9490 mRNA_1122 0.13 -0.9
453,816 + 9490 mRNA_1122 0.13 -2.2
453,819 - 9490 mRNA_1122 0.13 -3.1
453,822 - 9490 mRNA_1122 0.13 -3.8
453,829 + 9490 mRNA_1122 0.13 -3.4
453,833 - 9490 mRNA_1122 0.13 -2.1
453,836 + 9490 mRNA_1122 0.13 0.3
453,968 - 9490 mRNA_1122 0.18 -2.6
453,973 - 9490 mRNA_1122 0.18 -2.9
453,979 + 9490 mRNA_1122 0.19 -0.4
453,999 + 9490 mRNA_1122 0.19 -2.1
454,007 + 9490 mRNA_1122 0.20 -2.1
454,014 + 9490 mRNA_1122 0.20 -0.9
454,016 - 9490 mRNA_1122 0.20 -0.4
454,027 - 9490 mRNA_1122 0.20 -3.4
454,032 + 9490 mRNA_1122 0.20 -1.8
454,083 - 9490 mRNA_1122 0.22 0.1