Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1114

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434481 to 435131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435382 to 439006 9482 mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439344 to 441081 9483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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434,407 - -0.1
434,419 - -2.9
434,447 + -0.7
434,454 + -0.5
434,459 + -1.5
434,621 - 9481 mRNA_1113 0.22 0.4
434,623 - 9481 mRNA_1113 0.22 -2.8
434,769 + 9481 mRNA_1113 0.44 -2.0
435,044 + 9481 mRNA_1113 0.86 -2.2
435,518 + -3.2
435,725 - -0.3
435,900 - 9482 mRNA_1114 0.14 -3.0
436,216 - 9482 mRNA_1114 0.23 -2.5
436,297 - 9482 mRNA_1114 0.25 -0.5
436,381 + 9482 mRNA_1114 0.28 -2.1
436,385 + 9482 mRNA_1114 0.28 -2.5
436,493 - 9482 mRNA_1114 0.31 -2.2
438,544 + 9482 mRNA_1114 0.87 -0.6
438,578 + 9482 mRNA_1114 0.88 1.5
439,143 - -1.2
439,209 - -2.1
439,302 - 1.9
439,304 - -1.7
439,311 + -0.5
439,319 + -0.6
439,324 + 0.3
439,605 + 9483 mRNA_1115 0.15 -3.3