Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1113

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433263 to 434310 9480 mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434481 to 435131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435382 to 439006 9482

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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433,492 - 9480 mRNA_1112 0.22 2.2
433,537 + 9480 mRNA_1112 0.26 -1.7
433,541 - 9480 mRNA_1112 0.27 -0.9
433,687 + 9480 mRNA_1112 0.40 -0.9
433,688 - 9480 mRNA_1112 0.41 -0.1
433,697 + 9480 mRNA_1112 0.41 -1.0
433,705 - 9480 mRNA_1112 0.42 -1.0
434,118 - 9480 mRNA_1112 0.82 0.5
434,238 + -0.1
434,407 - -0.1
434,419 - -2.9
434,447 + -0.7
434,454 + -0.5
434,459 + -1.5
434,621 - 9481 mRNA_1113 0.22 0.4
434,623 - 9481 mRNA_1113 0.22 -2.8
434,769 + 9481 mRNA_1113 0.44 -2.0
435,044 + 9481 mRNA_1113 0.86 -2.2
435,518 + -3.2
435,725 - -0.3
435,900 - 9482 mRNA_1114 0.14 -3.0