Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1109

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477 mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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426,175 + 9476 mRNA_1108 0.86 -0.7
426,297 - 9476 mRNA_1108 0.89 -1.9
426,298 + 9476 mRNA_1108 0.89 0.2
426,306 - 9476 mRNA_1108 0.89 -2.3
426,371 - -2.7
426,449 + 1.6
426,544 + -3.0
426,617 - -2.9
426,797 + 0.7
426,860 + -1.9
426,866 - -2.1
426,876 + -0.2
426,876 + -1.6
426,884 + -0.4
427,001 + -2.1
427,034 + -1.7
427,037 + -2.3
427,055 + 9477 mRNA_1109 0.11 -1.7
427,143 - 9477 mRNA_1109 0.20 0.5
427,296 + 9477 mRNA_1109 0.36 -1.5
427,308 + 9477 mRNA_1109 0.38 0.0
427,347 - 9477 mRNA_1109 0.42 -1.8
427,355 - 9477 mRNA_1109 0.43 -0.6
427,472 + 9477 mRNA_1109 0.55 -0.6
427,508 + 9477 mRNA_1109 0.59 -1.7
427,559 + 9477 mRNA_1109 0.64 -2.7
427,559 + 9477 mRNA_1109 0.64 -3.1
427,605 - 9477 mRNA_1109 0.69 -2.0
427,750 - 9477 mRNA_1109 0.85 -3.9
427,758 + 9477 mRNA_1109 0.85 -0.2
427,866 + 2.3
427,892 - -3.3
427,899 + -2.3
427,899 + -2.4
427,989 - -0.5
428,080 + -0.7
428,242 + -0.5
428,486 - -2.8
428,502 - -1.8
428,657 + 9478 mRNA_1110 0.10 1.4
428,658 + 9478 mRNA_1110 0.10 1.2
428,665 - 9478 mRNA_1110 0.11 0.2
428,805 - 9478 mRNA_1110 0.21 -3.2
428,894 - 9478 mRNA_1110 0.27 -0.3