Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1102

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405793 to 407272 9469 mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407441 to 409508 9470 mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410090 to 412457 9471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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406,466 - 9469 mRNA_1101 0.45 0.2
406,488 + 9469 mRNA_1101 0.47 -1.3
406,936 - 9469 mRNA_1101 0.77 -0.0
406,937 - 9469 mRNA_1101 0.77 -2.9
407,066 + 9469 mRNA_1101 0.86 -0.5
407,133 - -3.4
407,177 - -2.4
407,195 + 0.3
407,328 - -0.1
407,785 - 9470 mRNA_1102 0.17 -2.5
407,893 + 9470 mRNA_1102 0.22 -1.2
407,968 + 9470 mRNA_1102 0.25 -4.2
408,058 + 9470 mRNA_1102 0.30 1.0
408,064 + 9470 mRNA_1102 0.30 -1.4
408,445 - 9470 mRNA_1102 0.49 -4.3
408,508 - 9470 mRNA_1102 0.52 -3.2
408,521 - 9470 mRNA_1102 0.52 -0.9
408,780 - 9470 mRNA_1102 0.65 -4.2
408,801 + 9470 mRNA_1102 0.66 -2.1
408,902 + 9470 mRNA_1102 0.71 -2.7
409,107 + 9470 mRNA_1102 0.81 -2.5
409,223 + 9470 mRNA_1102 0.86 -1.6
409,230 + 9470 mRNA_1102 0.87 -1.2
409,513 + -0.4
409,771 - -4.4
409,790 + -1.4
409,800 - -2.2
409,827 + -2.7
409,907 + -1.3
409,935 + -1.8
409,966 - -1.2
410,045 - -0.4
410,046 + -0.9
410,105 + -1.2
410,384 - 9471 mRNA_1103 0.12 -1.8
410,402 + 9471 mRNA_1103 0.13 -3.4