Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1088

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377970 to 379646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,147 + 9455 mRNA_1087 0.70 -3.0
379,155 + 9455 mRNA_1087 0.71 -0.3
379,270 - 9455 mRNA_1087 0.78 -0.7
379,737 - -1.6
379,832 + -3.7
379,861 - 0.3
379,865 + -2.5
379,870 - -0.3
379,870 - -1.0
379,995 - -1.8
380,022 + -0.9
380,036 + -4.0
380,044 - -1.0
380,054 + -2.9
380,089 + -1.3
380,174 - -0.5
380,177 + -0.3
380,346 + 9456 mRNA_1088 0.18 -1.1
380,629 - 9456 mRNA_1088 0.41 -0.7
381,055 - 9456 mRNA_1088 0.75 -3.5
381,182 - 9456 mRNA_1088 0.85 -2.8
381,231 + 9456 mRNA_1088 0.89 -1.6
381,239 + -0.5
381,338 + 1.4
381,342 - -2.1
381,356 + -2.0
381,373 + -1.4
381,427 + -0.7
381,448 + -2.4
381,458 + 0.4
381,472 - 0.6
381,597 - -2.5
381,619 + -2.4
381,621 + -0.6
381,642 + -1.0
381,652 + -2.2
381,749 + 0.8
381,763 + -1.9
381,861 - 9457 mRNA_1089 0.14 -1.8
381,921 - 9457 mRNA_1089 0.16 0.0
382,196 + 9457 mRNA_1089 0.28 -1.5
382,202 + 9457 mRNA_1089 0.28 -2.4