Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1087

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1086: 9454 - Hypothetical Protein, at 374386 to 377567 9454 mRNA_1087: 9455 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 377970 to 379646 9455 mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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377,013 - 9454 mRNA_1086 0.83 -3.6
377,065 + 9454 mRNA_1086 0.84 0.3
377,086 - 9454 mRNA_1086 0.85 -4.3
377,194 + 9454 mRNA_1086 0.88 -2.8
377,214 - 9454 mRNA_1086 0.89 0.0
377,343 - -0.3
377,487 - -2.0
377,826 - -1.1
377,839 + -3.4
377,861 - -1.4
377,978 - -1.0
378,230 - 9455 mRNA_1087 0.16 -1.5
378,570 + 9455 mRNA_1087 0.36 -0.8
378,850 - 9455 mRNA_1087 0.52 -5.0
378,993 - 9455 mRNA_1087 0.61 -2.7
379,147 + 9455 mRNA_1087 0.70 -3.0
379,155 + 9455 mRNA_1087 0.71 -0.3
379,270 - 9455 mRNA_1087 0.78 -0.7
379,737 - -1.6
379,832 + -3.7
379,861 - 0.3
379,865 + -2.5
379,870 - -0.3
379,870 - -1.0
379,995 - -1.8
380,022 + -0.9
380,036 + -4.0
380,044 - -1.0
380,054 + -2.9
380,089 + -1.3
380,174 - -0.5
380,177 + -0.3
380,346 + 9456 mRNA_1088 0.18 -1.1
380,629 - 9456 mRNA_1088 0.41 -0.7