Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1064

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315591 to 316093 9431 mRNA_1064: 9432 - K05533 ANP1 mannan polymerase II complex ANP1 subunit, at 316506 to 317869 9432 mRNA_1065: 9433 - Hypothetical Protein, at 318251 to 319455 9433

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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315,557 + 0.4
315,702 - 9431 mRNA_1063 0.22 -2.3
315,705 + 9431 mRNA_1063 0.23 -0.4
315,855 - 9431 mRNA_1063 0.52 -3.3
315,881 + 9431 mRNA_1063 0.58 -0.0
316,015 + 9431 mRNA_1063 0.84 -2.6
316,018 - 9431 mRNA_1063 0.85 -2.8
316,031 + 9431 mRNA_1063 0.87 -1.9
316,063 + -0.5
316,065 - -1.1
316,177 - -0.3
316,201 - -3.3
316,237 + -0.9
316,354 - -3.3
316,362 + -1.1
316,480 - -0.6
316,509 + -1.8
316,632 - -3.1
316,795 + 9432 mRNA_1064 0.21 -2.6
317,200 - 9432 mRNA_1064 0.51 -1.8
317,202 - 9432 mRNA_1064 0.51 -3.8
317,205 + 9432 mRNA_1064 0.51 -3.4
317,211 + 9432 mRNA_1064 0.52 -2.2
317,221 + 9432 mRNA_1064 0.52 -1.1
317,238 - 9432 mRNA_1064 0.54 -0.4
317,787 + 0.0
317,932 - 0.0
317,936 - -1.5
317,947 - -1.7
318,078 - -1.2
318,078 - 0.3
318,090 + -1.0
318,097 + -3.7
318,098 + -2.2
318,100 - -1.0
318,101 + -0.1
318,199 + -0.1
318,394 - 9433 mRNA_1065 0.12 -2.0
318,398 + 9433 mRNA_1065 0.12 0.4
318,404 - 9433 mRNA_1065 0.13 -0.5
318,560 + 9433 mRNA_1065 0.26 -1.0
318,820 - 9433 mRNA_1065 0.47 -0.5