Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1062

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315591 to 316093 9431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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310,578 - 9429 mRNA_1061 0.75 -0.1
310,646 - 9429 mRNA_1061 0.77 -3.3
310,646 - 9429 mRNA_1061 0.77 -0.9
310,665 + 9429 mRNA_1061 0.78 -3.3
310,707 - 9429 mRNA_1061 0.79 -3.2
310,752 - 9429 mRNA_1061 0.81 -0.9
310,755 - 9429 mRNA_1061 0.81 2.8
310,758 + 9429 mRNA_1061 0.81 -2.0
310,767 + 9429 mRNA_1061 0.81 -2.6
310,971 + 9429 mRNA_1061 0.89 0.9
311,062 + -1.6
311,217 + -1.3
311,349 + -0.9
311,349 - -1.3
311,372 + -1.0
311,393 + -0.9
311,905 - 9430 mRNA_1062 0.15 0.3
312,482 + 9430 mRNA_1062 0.31 -0.7
312,536 + 9430 mRNA_1062 0.32 -1.3
312,913 + 9430 mRNA_1062 0.43 -1.4
312,918 - 9430 mRNA_1062 0.43 0.1
312,979 - 9430 mRNA_1062 0.45 -2.3
313,090 + 9430 mRNA_1062 0.48 -2.0
313,134 + 9430 mRNA_1062 0.49 -1.3
313,215 - 9430 mRNA_1062 0.51 -2.1
313,227 - 9430 mRNA_1062 0.51 -3.1
313,238 - 9430 mRNA_1062 0.52 -0.6
313,315 + 9430 mRNA_1062 0.54 -0.8
313,420 + 9430 mRNA_1062 0.57 -1.7
313,459 + 9430 mRNA_1062 0.58 -2.2
313,471 + 9430 mRNA_1062 0.58 -0.8
313,497 + 9430 mRNA_1062 0.59 -0.5
313,510 + 9430 mRNA_1062 0.59 -2.7
313,692 + 9430 mRNA_1062 0.64 -1.7
313,960 - 9430 mRNA_1062 0.72 -1.3
314,187 - 9430 mRNA_1062 0.78 -2.3
314,568 + 9430 mRNA_1062 0.89 -2.8
314,610 + -2.3
314,611 - -3.1
314,716 + -0.8
314,833 + -2.4
314,883 - -1.1
314,890 + -0.3
315,026 + -3.3
315,036 + -1.1
315,120 + -0.3
315,148 + -0.1
315,255 - -0.1
315,290 - -1.7
315,416 + -3.2
315,448 + -0.4
315,557 + 0.4
315,702 - 9431 mRNA_1063 0.22 -2.3
315,705 + 9431 mRNA_1063 0.23 -0.4
315,855 - 9431 mRNA_1063 0.52 -3.3
315,881 + 9431 mRNA_1063 0.58 -0.0