Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1061

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301806 to 307768 9428 mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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307,550 - -1.6
307,837 - -0.1
307,850 + -1.1
307,861 - 0.2
307,965 - -0.7
308,021 - -2.6
308,152 - -2.9
308,283 + -1.2
308,334 + 0.4
308,619 - 0.1
309,107 + 9429 mRNA_1061 0.22 -2.4
309,165 - 9429 mRNA_1061 0.24 -0.4
309,437 - 9429 mRNA_1061 0.34 -3.4
309,475 + 9429 mRNA_1061 0.35 -1.3
309,718 + 9429 mRNA_1061 0.44 -3.6
310,172 - 9429 mRNA_1061 0.60 -4.2
310,215 - 9429 mRNA_1061 0.62 -3.4
310,271 - 9429 mRNA_1061 0.64 -0.5
310,317 + 9429 mRNA_1061 0.65 -0.5
310,578 - 9429 mRNA_1061 0.75 -0.1
310,646 - 9429 mRNA_1061 0.77 -3.3
310,646 - 9429 mRNA_1061 0.77 -0.9
310,665 + 9429 mRNA_1061 0.78 -3.3
310,707 - 9429 mRNA_1061 0.79 -3.2
310,752 - 9429 mRNA_1061 0.81 -0.9
310,755 - 9429 mRNA_1061 0.81 2.8
310,758 + 9429 mRNA_1061 0.81 -2.0
310,767 + 9429 mRNA_1061 0.81 -2.6
310,971 + 9429 mRNA_1061 0.89 0.9
311,062 + -1.6
311,217 + -1.3
311,349 + -0.9
311,349 - -1.3
311,372 + -1.0
311,393 + -0.9
311,905 - 9430 mRNA_1062 0.15 0.3