Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1041

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259080 to 260427 9408 mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260898 to 261462 9409 mRNA_1042: 9410 - Hypothetical Protein, at 261583 to 262732 9410

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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260,146 - 9408 mRNA_1040 0.79 -0.5
260,172 + 9408 mRNA_1040 0.81 -1.7
260,185 + 9408 mRNA_1040 0.82 -1.6
260,276 - 9408 mRNA_1040 0.89 -1.1
260,310 + -0.3
260,396 - -3.9
260,456 + -1.8
260,615 + -1.2
260,624 - -1.8
260,635 + -3.4
260,643 + -3.1
260,746 - 1.0
260,901 + -2.3
260,932 + -0.4
261,064 - 9409 mRNA_1041 0.29 -2.1
261,085 - 9409 mRNA_1041 0.33 -0.5
261,087 + 9409 mRNA_1041 0.33 -2.2
261,194 - 9409 mRNA_1041 0.52 -0.7
261,210 - 9409 mRNA_1041 0.55 -3.6
261,349 - 9409 mRNA_1041 0.80 -3.6
261,350 + 9409 mRNA_1041 0.80 -3.8
261,355 + 9409 mRNA_1041 0.81 -1.5
261,373 + 9409 mRNA_1041 0.84 -4.3
261,506 - -2.0
261,554 - -0.7
261,655 + -2.8
261,820 - 9410 mRNA_1042 0.21 -2.1
261,888 + 9410 mRNA_1042 0.27 0.3
261,911 + 9410 mRNA_1042 0.29 -1.0
261,932 + 9410 mRNA_1042 0.30 0.6
261,932 - 9410 mRNA_1042 0.30 -1.6
262,106 - 9410 mRNA_1042 0.45 -2.7
262,110 + 9410 mRNA_1042 0.46 -1.6
262,255 - 9410 mRNA_1042 0.58 -1.4
262,414 - 9410 mRNA_1042 0.72 -1.0
262,419 - 9410 mRNA_1042 0.73 -0.8
262,421 + 9410 mRNA_1042 0.73 -3.5
262,427 - 9410 mRNA_1042 0.73 -0.1