Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1029

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236228 to 240194 9396 mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240232 to 241544 9397 mRNA_1030: 9398 - Hypothetical Protein, at 241956 to 242588 9398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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239,470 - 9396 mRNA_1028 0.82 -3.3
240,729 - 9397 mRNA_1029 0.38 -1.4
240,740 + 9397 mRNA_1029 0.39 -2.3
241,178 + 9397 mRNA_1029 0.72 -0.6
241,601 - -3.9
241,609 + -3.1
241,740 - -3.3
241,929 + 1.1
242,031 - 9398 mRNA_1030 0.12 -1.5
242,077 - 9398 mRNA_1030 0.19 -3.1
242,080 - 9398 mRNA_1030 0.20 -0.4
242,162 - 9398 mRNA_1030 0.33 0.4
242,348 - 9398 mRNA_1030 0.62 -0.3
242,355 - 9398 mRNA_1030 0.63 -0.8