Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1028

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1027: 9395 - Hypothetical Protein, at 235522 to 235827 9395 mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236228 to 240194 9396 mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240232 to 241544 9397

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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235,271 - -0.7
235,484 + -0.4
235,488 + -0.1
235,492 - -3.3
235,594 - 9395 mRNA_1027 0.24 -3.2
235,783 - 9395 mRNA_1027 0.85 -0.8
235,938 + -2.3
236,028 + -1.3
236,031 - -2.2
236,031 - -1.1
236,034 + -0.5
236,047 + -0.7
236,193 + 0.4
236,344 + -0.3
236,358 + -1.0
236,913 + 9396 mRNA_1028 0.17 -0.7
237,079 - 9396 mRNA_1028 0.21 -0.5
237,080 + 9396 mRNA_1028 0.21 -0.7
237,094 - 9396 mRNA_1028 0.22 -2.8
237,400 - 9396 mRNA_1028 0.30 -2.0
237,566 + 9396 mRNA_1028 0.34 -1.4
238,069 + 9396 mRNA_1028 0.46 -1.2
238,095 + 9396 mRNA_1028 0.47 -0.9
238,101 + 9396 mRNA_1028 0.47 1.4
238,285 + 9396 mRNA_1028 0.52 -0.7
238,286 - 9396 mRNA_1028 0.52 -1.9
238,326 + 9396 mRNA_1028 0.53 -1.2
238,329 - 9396 mRNA_1028 0.53 -1.0
238,333 - 9396 mRNA_1028 0.53 -2.2
238,391 - 9396 mRNA_1028 0.55 -2.0
238,502 - 9396 mRNA_1028 0.57 -1.1
238,564 - 9396 mRNA_1028 0.59 -1.6
238,678 - 9396 mRNA_1028 0.62 -1.3
238,788 - 9396 mRNA_1028 0.65 -1.9
238,799 - 9396 mRNA_1028 0.65 -2.2
238,842 + 9396 mRNA_1028 0.66 0.5
239,183 + 9396 mRNA_1028 0.74 -1.1
239,470 - 9396 mRNA_1028 0.82 -3.3
240,729 - 9397 mRNA_1029 0.38 -1.4
240,740 + 9397 mRNA_1029 0.39 -2.3
241,178 + 9397 mRNA_1029 0.72 -0.6