Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1024

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1023: 9391 - K08272 CAB39, MO25 calcium binding protein 39, at 228517 to 230203 9391 mRNA_1024: 9392 - HMMPfam-Thaumatin family-PF00314,PIRSF--PIRSF002703,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 230632 to 231986 9392 mRNA_1025: 9393 - BLAST MIND kinetochore complex component Nnf1 [Trichophyton..., at 232781 to 233762 9393

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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230,212 - -3.4
230,354 + 0.4
230,464 - -1.9
230,495 - -1.6
230,510 - -0.4
230,890 + 9392 mRNA_1024 0.19 -3.0
230,901 + 9392 mRNA_1024 0.20 -1.2
231,023 - 9392 mRNA_1024 0.29 -0.3
231,044 - 9392 mRNA_1024 0.30 -1.7
231,064 + 9392 mRNA_1024 0.32 -1.3
231,445 - 9392 mRNA_1024 0.60 -0.9
231,807 - 9392 mRNA_1024 0.87 -1.7
231,868 + -1.6
231,910 + -1.0
232,090 - -3.3
232,144 + -2.0
232,435 - -2.7
232,447 + -2.7
232,472 - -3.5
232,474 - -0.8
232,502 - -0.6
232,616 - -1.0
232,642 + -1.0
232,779 - 0.4
232,822 + -1.1