Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1000

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_999: 9367 - HMMPfam-PAPA-1-like conserved region-PF04795, at 169197 to 171213 9367 mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171507 to 175243 9368 mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175417 to 177383 9369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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170,552 - 9367 mRNA_999 0.67 -2.0
170,697 + 9367 mRNA_999 0.74 -1.0
170,712 + 9367 mRNA_999 0.75 -1.6
170,853 + 9367 mRNA_999 0.82 -2.2
171,016 - -2.3
171,064 - -2.8
171,071 - -1.7
171,114 - 0.9
171,140 + -2.1
171,170 + -0.4
171,274 + -2.2
171,285 + -0.5
171,414 - -0.1
171,424 - -0.1
171,558 - -2.4
171,568 + 2.2
171,569 - -0.4
172,063 + 9368 mRNA_1000 0.15 1.1
172,413 + 9368 mRNA_1000 0.24 -4.2
172,467 + 9368 mRNA_1000 0.26 -1.5
172,867 + 9368 mRNA_1000 0.36 -2.4
172,877 + 9368 mRNA_1000 0.37 -2.0
173,224 + 9368 mRNA_1000 0.46 -1.8
173,647 - 9368 mRNA_1000 0.57 -1.9
173,834 - 9368 mRNA_1000 0.62 -1.3
174,236 - 9368 mRNA_1000 0.73 -1.7
174,279 - 9368 mRNA_1000 0.74 -1.6
174,840 - 9368 mRNA_1000 0.89 -1.7
174,847 + 9368 mRNA_1000 0.89 -1.0
174,873 - -2.3
174,880 + -1.3
174,981 - -1.5
175,107 - -2.4
175,644 + 9369 mRNA_1001 0.12 -1.9
175,675 - 9369 mRNA_1001 0.13 -1.9
175,697 - 9369 mRNA_1001 0.14 -0.2
175,794 + 9369 mRNA_1001 0.19 1.1
176,105 - 9369 mRNA_1001 0.35 -2.0
176,143 + 9369 mRNA_1001 0.37 0.3