Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_987

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136496 to 139711 9354 mRNA_987: 9355 - K04773 sppA protease IV, at 140246 to 143358 9355 mRNA_988: 9356 - BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu..., at 143512 to 144351 9356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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139,372 + 9354 mRNA_986 0.89 0.3
139,377 + 9354 mRNA_986 0.90 -0.6
139,418 - -1.6
139,569 + -3.2
139,737 + -2.4
140,164 + -0.7
140,186 + -1.7
140,384 - -0.7
140,764 + 9355 mRNA_987 0.17 -1.1
141,214 - 9355 mRNA_987 0.31 -3.3
141,872 + 9355 mRNA_987 0.52 -3.1
142,205 + 9355 mRNA_987 0.63 -0.9
142,241 - 9355 mRNA_987 0.64 1.7
142,272 + 9355 mRNA_987 0.65 -1.7
142,393 + 9355 mRNA_987 0.69 -1.5
142,406 + 9355 mRNA_987 0.69 -1.9
142,663 + 9355 mRNA_987 0.78 -2.7
142,673 - 9355 mRNA_987 0.78 -1.3
142,895 + 9355 mRNA_987 0.85 -0.7
142,963 + 9355 mRNA_987 0.87 -3.0
143,099 - -2.3
143,122 - -0.1
143,283 - -1.6
143,401 - 0.4
143,416 + -2.1
143,434 + -4.5
143,435 + -0.2
143,436 + -0.8
143,735 - 9356 mRNA_988 0.27 -2.8
143,738 - 9356 mRNA_988 0.27 -1.5
144,277 + -0.9