Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_973

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_972: 9340 - Hypothetical Protein, at 107840 to 108806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109023 to 112852 9341 mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113366 to 114313 9342

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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108,046 + 9340 mRNA_972 0.21 -0.9
108,065 + 9340 mRNA_972 0.23 -1.9
108,071 - 9340 mRNA_972 0.24 -2.6
108,084 + 9340 mRNA_972 0.25 -2.8
108,089 + 9340 mRNA_972 0.26 -1.1
108,099 - 9340 mRNA_972 0.27 -0.4
108,114 + 9340 mRNA_972 0.28 -0.8
108,117 - 9340 mRNA_972 0.29 -0.7
108,127 - 9340 mRNA_972 0.30 -2.8
108,128 - 9340 mRNA_972 0.30 -2.4
108,131 + 9340 mRNA_972 0.30 -0.5
108,131 + 9340 mRNA_972 0.30 -3.1
108,139 - 9340 mRNA_972 0.31 -1.2
108,145 + 9340 mRNA_972 0.32 -2.3
108,147 - 9340 mRNA_972 0.32 -1.3
108,166 + 9340 mRNA_972 0.34 2.0
108,169 + 9340 mRNA_972 0.34 -5.2
108,192 - 9340 mRNA_972 0.36 -1.1
108,197 + 9340 mRNA_972 0.37 -0.4
108,215 + 9340 mRNA_972 0.39 -3.8
108,220 + 9340 mRNA_972 0.39 0.2
108,228 - 9340 mRNA_972 0.40 -2.0
108,231 - 9340 mRNA_972 0.40 -1.8
108,233 - 9340 mRNA_972 0.41 -0.9
108,233 + 9340 mRNA_972 0.41 -2.4
108,234 - 9340 mRNA_972 0.41 -1.8
108,247 - 9340 mRNA_972 0.42 -2.0
108,248 + 9340 mRNA_972 0.42 -1.6
108,250 + 9340 mRNA_972 0.42 -0.5
108,252 - 9340 mRNA_972 0.43 0.4
108,254 + 9340 mRNA_972 0.43 0.5
108,257 - 9340 mRNA_972 0.43 -1.4
108,259 + 9340 mRNA_972 0.43 -1.5
108,261 - 9340 mRNA_972 0.44 -1.3
108,265 - 9340 mRNA_972 0.44 -3.3
108,266 + 9340 mRNA_972 0.44 0.0
108,270 - 9340 mRNA_972 0.44 -1.9
108,270 - 9340 mRNA_972 0.44 -1.7
108,271 + 9340 mRNA_972 0.45 -0.4
108,271 + 9340 mRNA_972 0.45 0.1
108,273 - 9340 mRNA_972 0.45 -1.6
108,286 - 9340 mRNA_972 0.46 0.0
108,293 - 9340 mRNA_972 0.47 -0.1
108,297 - 9340 mRNA_972 0.47 -0.1
108,298 - 9340 mRNA_972 0.47 -0.5
108,298 + 9340 mRNA_972 0.47 -2.2
108,298 + 9340 mRNA_972 0.47 -1.1
108,304 - 9340 mRNA_972 0.48 -0.5
108,314 - 9340 mRNA_972 0.49 -0.1
108,328 + 9340 mRNA_972 0.50 -1.1
108,338 + 9340 mRNA_972 0.51 -0.3
108,357 + 9340 mRNA_972 0.53 -1.9
108,378 + 9340 mRNA_972 0.56 -1.2
108,378 - 9340 mRNA_972 0.56 1.0
108,390 + 9340 mRNA_972 0.57 -1.6
108,398 - 9340 mRNA_972 0.58 -3.0
108,399 - 9340 mRNA_972 0.58 -0.3
108,400 - 9340 mRNA_972 0.58 -1.4
108,409 + 9340 mRNA_972 0.59 0.0
108,424 + 9340 mRNA_972 0.60 -1.7
108,433 + 9340 mRNA_972 0.61 -2.3
108,455 + 9340 mRNA_972 0.64 -0.9
108,460 + 9340 mRNA_972 0.64 -1.4
108,461 + 9340 mRNA_972 0.64 0.8
108,462 - 9340 mRNA_972 0.64 -1.8
108,472 + 9340 mRNA_972 0.65 -0.6
108,474 + 9340 mRNA_972 0.66 -3.3
108,496 - 9340 mRNA_972 0.68 -3.4
108,497 + 9340 mRNA_972 0.68 -1.2
108,502 + 9340 mRNA_972 0.68 0.7
108,503 + 9340 mRNA_972 0.69 0.3
108,504 + 9340 mRNA_972 0.69 -0.7
108,505 + 9340 mRNA_972 0.69 0.6
108,506 + 9340 mRNA_972 0.69 -0.6
108,507 - 9340 mRNA_972 0.69 -2.9
108,516 + 9340 mRNA_972 0.70 -0.8
108,524 - 9340 mRNA_972 0.71 -2.0
108,534 - 9340 mRNA_972 0.72 0.1
108,535 - 9340 mRNA_972 0.72 -0.5
108,536 - 9340 mRNA_972 0.72 -1.5
108,542 + 9340 mRNA_972 0.73 -1.4
108,545 - 9340 mRNA_972 0.73 -0.3
108,546 - 9340 mRNA_972 0.73 -1.8
108,547 + 9340 mRNA_972 0.73 3.0
108,554 - 9340 mRNA_972 0.74 -0.2
108,555 + 9340 mRNA_972 0.74 -2.5
108,558 + 9340 mRNA_972 0.74 -0.2
108,559 + 9340 mRNA_972 0.74 -2.0
108,588 + 9340 mRNA_972 0.77 -1.0
108,597 - 9340 mRNA_972 0.78 -3.2
108,626 + 9340 mRNA_972 0.81 -1.0
108,647 + 9340 mRNA_972 0.83 -0.9
108,651 - 9340 mRNA_972 0.84 -1.9
108,666 + 9340 mRNA_972 0.85 -0.4
108,762 + -2.1
108,772 + 0.6
108,772 + 1.5
108,783 + 1.1
108,789 - -1.8
108,794 - -1.5
108,796 + -1.3
108,801 + -0.9
108,802 + -1.1
108,803 + -0.3
108,807 + 0.3
108,807 + -2.2
108,808 + -2.5
108,816 - -1.3
108,818 + -2.9
108,830 - -3.2
108,836 - 1.2
108,930 - 0.2
108,940 + -2.0
108,947 - -1.8
108,972 - -1.5
108,988 + -2.3
109,059 + -1.8
109,094 - -3.1
109,098 + 0.0
109,100 - -0.1
109,238 + 2.7
109,682 - 9341 mRNA_973 0.17 -1.9
109,974 - 9341 mRNA_973 0.25 -1.5
110,040 + 9341 mRNA_973 0.27 -3.7
110,106 - 9341 mRNA_973 0.28 1.4
110,288 + 9341 mRNA_973 0.33 -4.0
110,320 + 9341 mRNA_973 0.34 -0.9
110,427 + 9341 mRNA_973 0.37 0.0
110,829 - 9341 mRNA_973 0.47 -0.2
111,855 + 9341 mRNA_973 0.74 0.4
112,456 + 9341 mRNA_973 0.90 -1.3
112,744 + -0.7
112,748 - -1.3
112,751 - -1.8
112,859 + -1.5
112,868 - -4.0
113,020 + -2.7
113,070 + -1.8
113,161 - 1.2
113,189 + -2.3