Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_957

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_956: 9324 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 64037 to 66119 9324 mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67059 to 67959 9325 mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68505 to 72950 9326

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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66,238 + 1.8
66,268 + -2.1
66,282 - -0.1
66,323 + -2.5
66,333 - -1.8
66,359 - 1.5
66,367 + 1.1
66,375 - -0.6
66,382 + -3.8
66,418 - -1.3
66,676 - -0.9
66,676 + -3.9
66,693 + -0.2
66,701 - -0.9
66,812 + -1.2
66,836 + 0.6
66,842 - -2.2
66,891 + 0.8
66,892 - -1.9
66,962 - -0.8
66,972 + -0.6
67,008 + -2.9
67,126 + -2.4
67,126 + -3.7
67,135 + -0.2
67,269 - 9325 mRNA_957 0.23 -4.4
67,390 - 9325 mRNA_957 0.37 -0.6
67,540 - 9325 mRNA_957 0.53 -0.5
67,541 + 9325 mRNA_957 0.53 -0.4
67,567 - 9325 mRNA_957 0.56 0.8
67,590 + 9325 mRNA_957 0.59 -0.7
67,706 + 9325 mRNA_957 0.72 -2.8
67,709 - 9325 mRNA_957 0.72 -2.3
67,719 - 9325 mRNA_957 0.73 0.3
67,751 + 9325 mRNA_957 0.77 -2.4
68,023 - -0.8
68,047 + -3.2
68,132 + -3.1
68,141 - -1.7
68,156 + -2.5
68,166 - -1.9
68,167 - -0.4
68,189 - -2.9
68,340 - -0.7
68,448 - -2.6
68,470 - -2.3
68,476 + 0.0
68,493 + 0.2
68,624 - -0.6
68,680 - -1.0
68,727 - -0.8
68,784 + -1.3
68,882 + 2.5
68,917 + 0.0
68,930 + -0.5