Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_949

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41701 to 44858 9316 mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45301 to 46716 9317 mRNA_950: 9318 - Hypothetical Protein, at 46919 to 47823 9318

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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44,503 - 9316 mRNA_948 0.89 -1.3
44,900 + -0.4
45,025 + -1.8
45,026 - -1.0
45,037 + -2.1
45,044 + 0.0
45,056 + -1.6
45,188 + -1.1
45,342 + -3.0
45,465 + 9317 mRNA_949 0.12 -1.1
45,482 - 9317 mRNA_949 0.13 -3.4
45,484 + 9317 mRNA_949 0.13 -0.6
45,586 + 9317 mRNA_949 0.20 -1.2
45,590 + 9317 mRNA_949 0.20 -0.8
45,590 - 9317 mRNA_949 0.20 -3.7
45,596 - 9317 mRNA_949 0.21 -3.1
45,619 + 9317 mRNA_949 0.22 -2.8
45,755 - 9317 mRNA_949 0.32 -0.8
45,955 + 9317 mRNA_949 0.46 -1.4
46,069 - 9317 mRNA_949 0.54 0.5
46,175 - 9317 mRNA_949 0.62 -1.5
46,217 + 9317 mRNA_949 0.65 -2.3
46,799 - 0.9
46,985 - -1.0
47,127 + 9318 mRNA_950 0.23 0.1
47,135 - 9318 mRNA_950 0.24 -1.3
47,136 - 9318 mRNA_950 0.24 -1.1
47,137 - 9318 mRNA_950 0.24 -0.7
47,142 - 9318 mRNA_950 0.25 -2.4
47,145 + 9318 mRNA_950 0.25 -0.9
47,147 - 9318 mRNA_950 0.25 -1.9
47,150 + 9318 mRNA_950 0.26 -1.3
47,150 + 9318 mRNA_950 0.26 -1.9
47,159 + 9318 mRNA_950 0.27 -1.1
47,160 + 9318 mRNA_950 0.27 -0.5
47,165 + 9318 mRNA_950 0.27 -3.0
47,166 + 9318 mRNA_950 0.27 -1.0
47,166 + 9318 mRNA_950 0.27 0.7
47,201 - 9318 mRNA_950 0.31 -2.5
47,204 + 9318 mRNA_950 0.31 -0.3
47,206 + 9318 mRNA_950 0.32 -2.7
47,207 + 9318 mRNA_950 0.32 -1.5
47,207 - 9318 mRNA_950 0.32 -1.9
47,210 + 9318 mRNA_950 0.32 -0.6
47,212 - 9318 mRNA_950 0.32 -3.1
47,217 - 9318 mRNA_950 0.33 -2.1
47,223 + 9318 mRNA_950 0.34 -1.7
47,227 - 9318 mRNA_950 0.34 0.2
47,229 + 9318 mRNA_950 0.34 -2.5
47,230 - 9318 mRNA_950 0.34 -0.3
47,250 + 9318 mRNA_950 0.37 -1.1
47,329 + 9318 mRNA_950 0.45 -0.4
47,340 + 9318 mRNA_950 0.47 -0.4
47,351 + 9318 mRNA_950 0.48 -0.4
47,353 + 9318 mRNA_950 0.48 -0.2
47,354 + 9318 mRNA_950 0.48 -2.2
47,393 + 9318 mRNA_950 0.52 -1.1
47,395 + 9318 mRNA_950 0.53 -1.0
47,404 - 9318 mRNA_950 0.54 -2.1
47,410 + 9318 mRNA_950 0.54 -0.3
47,414 + 9318 mRNA_950 0.55 2.0
47,420 + 9318 mRNA_950 0.55 -1.9
47,504 - 9318 mRNA_950 0.65 -1.8
47,521 + 9318 mRNA_950 0.67 -2.0
47,525 + 9318 mRNA_950 0.67 -1.1
47,530 - 9318 mRNA_950 0.68 -1.9
47,539 + 9318 mRNA_950 0.69 -1.3
47,549 - 9318 mRNA_950 0.70 -1.8
47,552 + 9318 mRNA_950 0.70 -2.0
47,577 + 9318 mRNA_950 0.73 -2.6
47,577 + 9318 mRNA_950 0.73 -2.1
47,622 + 9318 mRNA_950 0.78 -1.9
47,705 - 9318 mRNA_950 0.87 -2.8