Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_947

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_946: 9314 - Hypothetical Protein, at 38031 to 38831 9314 mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38984 to 41581 9315 mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41701 to 44858 9316

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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37,984 + 2.1
37,990 + -0.5
37,993 + -3.9
37,999 + -2.5
38,002 + -1.4
38,004 + -0.9
38,004 + -2.8
38,004 + -0.9
38,006 - 0.0
38,008 + -1.5
38,026 - -1.4
38,026 - -0.1
38,052 + -0.4
38,064 + -1.3
38,101 + -2.1
38,104 + 1.3
38,150 + 9314 mRNA_946 0.15 -1.1
38,193 + 9314 mRNA_946 0.20 -2.7
38,264 + 9314 mRNA_946 0.29 -2.3
38,288 - 9314 mRNA_946 0.32 -1.1
38,309 + 9314 mRNA_946 0.35 -3.0
38,382 + 9314 mRNA_946 0.44 -1.7
38,658 - 9314 mRNA_946 0.78 1.5
38,735 - 9314 mRNA_946 0.88 -1.2
38,844 - -1.1
39,035 - -0.9
39,224 - -0.8
39,513 + 9315 mRNA_947 0.20 -0.5
39,666 + 9315 mRNA_947 0.26 -1.6
39,773 + 9315 mRNA_947 0.30 -0.7
39,883 - 9315 mRNA_947 0.35 -2.5
39,987 - 9315 mRNA_947 0.39 -0.6
40,344 + 9315 mRNA_947 0.52 -0.8
40,411 + 9315 mRNA_947 0.55 -2.9
40,602 - 9315 mRNA_947 0.62 -2.1
40,612 + 9315 mRNA_947 0.63 -1.5
41,053 - 9315 mRNA_947 0.80 -1.0
41,213 + 9315 mRNA_947 0.86 -1.8
41,256 - 9315 mRNA_947 0.87 -2.1
41,491 + -0.6
41,509 - 0.0
41,539 + -0.3
41,611 - -2.3
41,633 - -3.4
41,633 - -0.7
41,645 + -2.1
41,656 + -1.7
41,659 + -1.2
41,665 + -2.0
41,671 + -1.2
41,806 - -1.5
41,993 + -2.4
42,116 - 9316 mRNA_948 0.13 -1.1
42,122 + 9316 mRNA_948 0.13 -2.5
42,180 + 9316 mRNA_948 0.15 -1.6
42,265 + 9316 mRNA_948 0.18 -2.6
42,398 - 9316 mRNA_948 0.22 -1.8
42,441 + 9316 mRNA_948 0.23 0.3