Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_942

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27276 to 29421 9309 mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29520 to 30621 9310 mRNA_943: 9311 - K05759 PFN profilin, at 30809 to 31667 9311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,717 + 9309 mRNA_941 0.67 0.6
28,719 - 9309 mRNA_941 0.67 -2.3
28,877 - 9309 mRNA_941 0.75 0.5
28,976 - 9309 mRNA_941 0.79 -1.4
29,208 - -2.5
29,253 - -2.0
29,258 + -2.4
29,268 + -2.1
29,303 + -1.7
29,378 + -0.3
29,392 - -2.8
29,402 + -3.0
29,463 - -2.8
29,474 + -1.2
30,419 + 9310 mRNA_942 0.82 0.6
30,466 - 9310 mRNA_942 0.86 -0.7
30,488 + 9310 mRNA_942 0.88 -0.4
30,714 - 1.5
30,731 + 2.2
30,762 - 0.8
30,764 - 0.3
30,766 - -2.0
30,772 - -1.2
30,773 - -3.3
30,784 - 0.3
30,784 - -0.7
30,792 + -1.7
30,794 + -0.8