Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_941

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_940: 9308 - Hypothetical Protein, at 25419 to 26964 9308 mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27276 to 29421 9309 mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29520 to 30621 9310

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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26,379 + 9308 mRNA_940 0.62 0.3
26,433 - 9308 mRNA_940 0.66 -4.5
26,439 - 9308 mRNA_940 0.66 -0.7
26,441 - 9308 mRNA_940 0.66 -1.0
26,457 - 9308 mRNA_940 0.67 -2.6
26,516 - 9308 mRNA_940 0.71 -3.4
26,556 + 9308 mRNA_940 0.74 -1.8
26,560 + 9308 mRNA_940 0.74 -0.7
26,561 - 9308 mRNA_940 0.74 -2.2
26,566 + 9308 mRNA_940 0.74 0.4
26,619 + 9308 mRNA_940 0.78 1.4
26,629 + 9308 mRNA_940 0.78 -4.2
26,672 - 9308 mRNA_940 0.81 -1.1
26,727 + 9308 mRNA_940 0.85 0.4
26,727 - 9308 mRNA_940 0.85 0.0
26,727 - 9308 mRNA_940 0.85 -0.8
26,728 + 9308 mRNA_940 0.85 -4.7
26,820 + -0.3
26,822 + -1.7
26,866 - -1.7
26,869 + -2.0
26,891 + -1.1
26,960 - -4.5
27,001 - -0.4
27,021 + 0.4
27,021 - -1.3
27,025 - -1.4
27,025 - -1.3
27,074 - -1.6
27,119 + 0.9
27,156 - -1.7
27,159 - -1.1
27,197 + -1.9
27,409 - -0.5
27,417 - -0.3
27,443 - 0.3
27,447 - 0.6
27,470 - -0.4
27,507 + 9309 mRNA_941 0.11 0.2
27,559 + 9309 mRNA_941 0.13 -2.8
27,562 - 9309 mRNA_941 0.13 -0.9
28,047 - 9309 mRNA_941 0.36 -2.9
28,098 + 9309 mRNA_941 0.38 -1.4
28,120 + 9309 mRNA_941 0.39 -0.1
28,204 - 9309 mRNA_941 0.43 -0.0
28,485 + 9309 mRNA_941 0.56 -2.9
28,717 + 9309 mRNA_941 0.67 0.6
28,719 - 9309 mRNA_941 0.67 -2.3
28,877 - 9309 mRNA_941 0.75 0.5
28,976 - 9309 mRNA_941 0.79 -1.4
29,208 - -2.5
29,253 - -2.0
29,258 + -2.4
29,268 + -2.1
29,303 + -1.7
29,378 + -0.3
29,392 - -2.8
29,402 + -3.0
29,463 - -2.8
29,474 + -1.2
30,419 + 9310 mRNA_942 0.82 0.6