Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_918

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_917: 9285 - Hypothetical Protein, at 2190561 to 2191088 9285 mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2191363 to 2192706 9286 mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2192873 to 2195509 9287

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,190,386 - -0.7
2,190,410 + -0.2
2,190,528 - -1.5
2,190,533 + -2.2
2,190,701 - 9285 mRNA_917 0.27 -0.6
2,190,704 + 9285 mRNA_917 0.27 -1.5
2,190,714 + 9285 mRNA_917 0.29 -0.6
2,190,714 - 9285 mRNA_917 0.29 2.1
2,190,719 - 9285 mRNA_917 0.30 -0.4
2,190,721 + 9285 mRNA_917 0.30 -1.6
2,190,748 + 9285 mRNA_917 0.35 -1.8
2,190,768 - 9285 mRNA_917 0.39 -2.0
2,190,854 - 9285 mRNA_917 0.55 -2.6
2,191,008 + 9285 mRNA_917 0.85 -0.4
2,191,018 - 9285 mRNA_917 0.87 -3.0
2,191,048 + -0.8
2,191,135 - 0.2
2,191,190 + -1.5
2,191,210 - 0.6
2,191,214 - -1.2
2,191,215 - -0.7
2,191,297 - -2.1
2,191,318 + -3.1
2,191,337 - -0.4
2,191,395 + -0.0
2,191,395 + -3.4
2,191,400 + 1.7
2,191,403 - -1.0
2,191,776 + 9286 mRNA_918 0.31 -2.2
2,191,818 - 9286 mRNA_918 0.34 2.0
2,191,894 + 9286 mRNA_918 0.40 1.5
2,191,910 - 9286 mRNA_918 0.41 -1.7
2,191,932 + 9286 mRNA_918 0.42 2.3
2,191,962 + 9286 mRNA_918 0.45 0.3
2,191,992 - 9286 mRNA_918 0.47 -2.5
2,192,034 - 9286 mRNA_918 0.50 -2.6
2,192,059 - 9286 mRNA_918 0.52 2.2
2,192,243 + 9286 mRNA_918 0.65 -1.7
2,192,540 + 9286 mRNA_918 0.88 -1.2
2,193,170 - 9287 mRNA_919 0.11 -1.0
2,193,234 + 9287 mRNA_919 0.14 -0.6
2,193,237 - 9287 mRNA_919 0.14 -0.3
2,193,297 + 9287 mRNA_919 0.16 -0.4
2,193,404 - 9287 mRNA_919 0.20 -0.2
2,193,490 + 9287 mRNA_919 0.23 -2.2
2,193,644 - 9287 mRNA_919 0.29 -0.6