Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_902

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2149228 to 2151284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2151634 to 2155672 9270 mRNA_903: 9271 - Hypothetical Protein, at 2155958 to 2156725 9271

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,150,894 + 9269 mRNA_901 0.81 -3.2
2,151,015 - 9269 mRNA_901 0.87 -1.7
2,151,022 - 9269 mRNA_901 0.87 -1.8
2,151,040 - 9269 mRNA_901 0.88 -0.6
2,151,079 - -0.6
2,151,331 - -3.1
2,151,345 + -2.1
2,151,356 - 0.2
2,151,374 - -2.7
2,151,404 - 0.4
2,151,415 + -0.1
2,151,445 - -2.0
2,151,525 + -0.9
2,151,620 - -0.7
2,151,627 + -1.1
2,151,799 - -1.9
2,151,811 + -2.8
2,151,812 + -0.9
2,151,857 + -2.6
2,151,978 - -2.5
2,152,007 - -0.2
2,152,081 + 9270 mRNA_902 0.11 0.2
2,152,395 - 9270 mRNA_902 0.19 -0.0
2,152,404 - 9270 mRNA_902 0.19 -1.8
2,152,715 + 9270 mRNA_902 0.27 -0.0
2,152,735 - 9270 mRNA_902 0.27 -1.9
2,153,718 - 9270 mRNA_902 0.52 0.0
2,153,922 - 9270 mRNA_902 0.57 -0.6
2,155,485 + -2.5
2,155,681 - -1.1
2,155,769 - -0.5
2,155,914 + -2.4
2,156,047 - 9271 mRNA_903 0.12 -2.3
2,156,089 + 9271 mRNA_903 0.17 0.3
2,156,117 + 9271 mRNA_903 0.21 0.5
2,156,356 - 9271 mRNA_903 0.52 -0.6
2,156,375 + 9271 mRNA_903 0.54 -1.1