Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_901

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2146982 to 2149051 9268 mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2149228 to 2151284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2151634 to 2155672 9270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,148,254 - 9268 mRNA_900 0.61 -1.0
2,148,524 - 9268 mRNA_900 0.74 0.4
2,148,549 - 9268 mRNA_900 0.76 -1.9
2,148,673 + 9268 mRNA_900 0.82 -2.1
2,148,676 - 9268 mRNA_900 0.82 -3.1
2,148,687 - 9268 mRNA_900 0.82 -1.9
2,148,843 + 9268 mRNA_900 0.90 -1.7
2,148,981 - -1.9
2,149,000 + -0.8
2,149,025 + -3.3
2,149,131 + -0.8
2,149,134 - -1.9
2,149,143 + -2.0
2,149,147 + -0.5
2,149,148 - -0.9
2,149,152 + -1.7
2,149,189 - 0.6
2,149,191 + -3.9
2,149,198 + -2.1
2,149,208 - -3.1
2,149,269 + -0.4
2,149,272 + -1.6
2,149,301 - -2.5
2,149,301 - -2.0
2,149,305 - -1.6
2,149,313 + 0.4
2,149,390 - -2.0
2,149,429 + -1.0
2,149,442 - 9269 mRNA_901 0.10 1.8
2,149,638 + 9269 mRNA_901 0.20 -1.7
2,149,715 - 9269 mRNA_901 0.24 0.7
2,149,894 + 9269 mRNA_901 0.32 -2.5
2,149,927 - 9269 mRNA_901 0.34 -1.1
2,150,050 + 9269 mRNA_901 0.40 -0.9
2,150,192 - 9269 mRNA_901 0.47 -0.8
2,150,268 - 9269 mRNA_901 0.51 -0.5
2,150,297 - 9269 mRNA_901 0.52 -0.8
2,150,315 + 9269 mRNA_901 0.53 -1.3
2,150,315 + 9269 mRNA_901 0.53 -2.9
2,150,315 - 9269 mRNA_901 0.53 -0.8
2,150,325 + 9269 mRNA_901 0.53 -1.8
2,150,339 + 9269 mRNA_901 0.54 -1.0
2,150,349 + 9269 mRNA_901 0.54 -0.8
2,150,349 - 9269 mRNA_901 0.54 -1.7
2,150,540 + 9269 mRNA_901 0.64 -2.9
2,150,894 + 9269 mRNA_901 0.81 -3.2
2,151,015 - 9269 mRNA_901 0.87 -1.7
2,151,022 - 9269 mRNA_901 0.87 -1.8
2,151,040 - 9269 mRNA_901 0.88 -0.6
2,151,079 - -0.6
2,151,331 - -3.1
2,151,345 + -2.1
2,151,356 - 0.2
2,151,374 - -2.7
2,151,404 - 0.4
2,151,415 + -0.1
2,151,445 - -2.0
2,151,525 + -0.9
2,151,620 - -0.7
2,151,627 + -1.1
2,151,799 - -1.9
2,151,811 + -2.8
2,151,812 + -0.9
2,151,857 + -2.6
2,151,978 - -2.5
2,152,007 - -0.2
2,152,081 + 9270 mRNA_902 0.11 0.2