Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_900

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_899: 9267 - K00486 KMO kynurenine 3-monooxygenase, at 2144994 to 2146885 9267 mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2146982 to 2149051 9268 mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2149228 to 2151284 9269

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,146,028 + 9267 mRNA_899 0.55 -0.5
2,146,063 - 9267 mRNA_899 0.57 -1.2
2,146,215 + 9267 mRNA_899 0.65 -1.9
2,146,744 - 1.5
2,146,772 - -3.0
2,146,807 + -3.7
2,146,934 - -2.3
2,147,033 - -0.7
2,147,092 - -0.9
2,147,191 + 9268 mRNA_900 0.10 -0.4
2,147,382 + 9268 mRNA_900 0.19 -1.4
2,147,407 + 9268 mRNA_900 0.21 -3.3
2,147,479 - 9268 mRNA_900 0.24 -1.0
2,147,680 + 9268 mRNA_900 0.34 -2.7
2,147,745 + 9268 mRNA_900 0.37 -0.9
2,147,941 - 9268 mRNA_900 0.46 -1.8
2,148,099 + 9268 mRNA_900 0.54 0.2
2,148,133 + 9268 mRNA_900 0.56 -2.9
2,148,254 - 9268 mRNA_900 0.61 -1.0
2,148,524 - 9268 mRNA_900 0.74 0.4
2,148,549 - 9268 mRNA_900 0.76 -1.9
2,148,673 + 9268 mRNA_900 0.82 -2.1
2,148,676 - 9268 mRNA_900 0.82 -3.1
2,148,687 - 9268 mRNA_900 0.82 -1.9
2,148,843 + 9268 mRNA_900 0.90 -1.7
2,148,981 - -1.9
2,149,000 + -0.8
2,149,025 + -3.3
2,149,131 + -0.8
2,149,134 - -1.9
2,149,143 + -2.0
2,149,147 + -0.5
2,149,148 - -0.9
2,149,152 + -1.7
2,149,189 - 0.6
2,149,191 + -3.9
2,149,198 + -2.1
2,149,208 - -3.1
2,149,269 + -0.4
2,149,272 + -1.6
2,149,301 - -2.5
2,149,301 - -2.0
2,149,305 - -1.6
2,149,313 + 0.4
2,149,390 - -2.0
2,149,429 + -1.0
2,149,442 - 9269 mRNA_901 0.10 1.8
2,149,638 + 9269 mRNA_901 0.20 -1.7
2,149,715 - 9269 mRNA_901 0.24 0.7
2,149,894 + 9269 mRNA_901 0.32 -2.5
2,149,927 - 9269 mRNA_901 0.34 -1.1
2,150,050 + 9269 mRNA_901 0.40 -0.9