Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_888

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2120466 to 2123959 9255 mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2124160 to 2125041 9256 mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2126028 to 2126699 9257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,123,679 - -0.1
2,123,859 - -0.9
2,123,957 + -1.2
2,124,003 + -3.1
2,124,009 - -2.3
2,124,108 - -0.2
2,124,139 - -3.0
2,124,179 - 3.2
2,124,192 - -1.4
2,124,295 - 9256 mRNA_888 0.15 -2.5
2,124,351 - 9256 mRNA_888 0.22 -4.2
2,124,464 + 9256 mRNA_888 0.34 -0.9
2,124,744 - 9256 mRNA_888 0.66 -0.4
2,124,878 - 9256 mRNA_888 0.81 -0.0
2,125,018 + -1.8
2,125,021 - 0.9
2,125,207 + -0.4
2,125,702 + -1.1
2,125,789 + -2.6