Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_885

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_884: 9252 - Hypothetical Protein, at 2111013 to 2111465 9252 mRNA_885: 9253 - K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12, at 2111584 to 2117077 9253 mRNA_886: 9254 - KOG2504 Monocarboxylate transporter, at 2117590 to 2119437 9254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,111,003 + -0.2
2,111,048 - -0.2
2,111,160 - 9252 mRNA_884 0.32 -1.1
2,111,272 + 9252 mRNA_884 0.57 -1.7
2,111,379 + 9252 mRNA_884 0.81 -1.3
2,111,487 - -1.6
2,112,003 + -0.6
2,112,022 + -1.5
2,112,112 - -1.2
2,112,224 + 9253 mRNA_885 0.12 -1.6
2,112,351 - 9253 mRNA_885 0.14 -3.0
2,112,378 + 9253 mRNA_885 0.14 -1.6
2,113,002 + 9253 mRNA_885 0.26 -2.1
2,113,033 - 9253 mRNA_885 0.26 -2.4
2,113,038 - 9253 mRNA_885 0.26 -2.2
2,113,336 - 9253 mRNA_885 0.32 -2.7
2,113,634 - 9253 mRNA_885 0.37 -2.5
2,113,637 - 9253 mRNA_885 0.37 -2.1
2,113,832 + 9253 mRNA_885 0.41 -2.8
2,114,135 - 9253 mRNA_885 0.46 -0.2
2,114,205 - 9253 mRNA_885 0.48 -2.2
2,114,287 + 9253 mRNA_885 0.49 -0.1
2,114,545 + 9253 mRNA_885 0.54 0.0
2,114,563 - 9253 mRNA_885 0.54 1.4
2,114,735 - 9253 mRNA_885 0.57 -0.8
2,114,859 - 9253 mRNA_885 0.60 -1.4
2,115,018 - 9253 mRNA_885 0.63 -2.6
2,115,071 + 9253 mRNA_885 0.63 -2.8
2,115,128 - 9253 mRNA_885 0.65 -2.1
2,115,133 + 9253 mRNA_885 0.65 -1.6
2,115,164 + 9253 mRNA_885 0.65 -1.4
2,115,170 + 9253 mRNA_885 0.65 -2.5
2,115,437 + 9253 mRNA_885 0.70 -2.0
2,115,459 + 9253 mRNA_885 0.71 -1.6
2,115,645 + 9253 mRNA_885 0.74 -2.3
2,115,769 - 9253 mRNA_885 0.76 -0.8
2,115,893 - 9253 mRNA_885 0.78 -1.9
2,116,195 - 9253 mRNA_885 0.84 -0.6
2,116,302 - 9253 mRNA_885 0.86 -1.6
2,116,331 - 9253 mRNA_885 0.86 -1.1
2,116,521 + 9253 mRNA_885 0.90 -1.3
2,116,759 + -1.2
2,116,967 + -0.9
2,117,071 + -1.2
2,117,094 + 0.5
2,117,285 + -0.7
2,117,312 - 0.6
2,117,328 + -2.3
2,117,362 + -1.5
2,117,377 + -2.8
2,117,387 + -0.9
2,117,387 + -3.3
2,117,391 - -0.4
2,117,395 + -0.0
2,117,396 + -0.8
2,117,409 - -1.0
2,117,415 + -0.9
2,117,509 - -0.6
2,117,549 - -0.8
2,117,586 + -3.1
2,117,592 - -1.8
2,117,594 - -1.7
2,117,608 + 0.1
2,117,609 + -1.8
2,117,691 + 0.2
2,117,708 + -3.0
2,117,716 + -1.0
2,117,830 + 9254 mRNA_886 0.13 -0.8
2,117,908 - 9254 mRNA_886 0.17 -1.7
2,117,917 + 9254 mRNA_886 0.18 -2.0