Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_878

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2092667 to 2095053 9245 mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2095411 to 2098626 9246

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
2,094,626 - 9245 mRNA_877 0.82 0.7
2,094,771 - 9245 mRNA_877 0.88 -0.3
2,095,005 + -1.4
2,095,042 + -0.1
2,095,197 + 1.3
2,095,329 + -1.0
2,095,329 + -2.4
2,095,330 + -0.4
2,095,364 + -1.7
2,095,490 - -0.8
2,095,493 + -1.6
2,095,497 + -1.5
2,095,503 - -3.0
2,095,634 + -2.4
2,095,774 - 9246 mRNA_878 0.11 -0.9
2,095,774 - 9246 mRNA_878 0.11 0.3
2,096,219 - 9246 mRNA_878 0.25 0.4
2,096,221 + 9246 mRNA_878 0.25 -1.6
2,096,541 + 9246 mRNA_878 0.35 -2.3
2,096,855 - 9246 mRNA_878 0.45 0.1
2,096,927 - 9246 mRNA_878 0.47 -2.7
2,096,953 + 9246 mRNA_878 0.48 -0.6
2,096,982 + 9246 mRNA_878 0.49 -3.3
2,096,988 - 9246 mRNA_878 0.49 0.3
2,097,146 - 9246 mRNA_878 0.54 -1.4
2,097,421 + 9246 mRNA_878 0.62 -2.1
2,097,705 - 9246 mRNA_878 0.71 -0.1
2,097,841 + 9246 mRNA_878 0.76 -1.6
2,097,861 + 9246 mRNA_878 0.76 -1.5
2,097,994 + 9246 mRNA_878 0.80 -1.8
2,098,435 + -3.2
2,098,451 + -2.0
2,098,453 - -0.3
2,098,478 + -1.6
2,098,555 + 0.6
2,098,562 - -0.9
2,098,578 - -1.5
2,098,602 + -1.8
2,098,604 - -3.9
2,098,607 + -3.8
2,098,619 + -1.3
2,098,674 - -3.0
2,098,677 + -2.4
2,098,694 + -0.0
2,098,702 - -2.2
2,098,703 + -1.1
2,098,711 + -1.0
2,098,715 + -1.4
2,098,721 - -0.5
2,098,734 + 0.6
2,098,734 - -1.2
2,098,734 - 1.3
2,098,735 + -3.4
2,098,735 + -1.4
2,098,737 - -1.8
2,098,738 - -1.8
2,098,741 + -3.6
2,098,741 + 0.0
2,098,743 - -0.8
2,098,746 - -2.8
2,098,747 + -3.6
2,098,754 + 0.7
2,098,759 - -1.4
2,098,759 - -1.5
2,098,759 - -0.8
2,098,759 + -0.4
2,098,761 - 0.5
2,098,762 + -1.9
2,098,762 + -1.7
2,098,763 - -2.8
2,098,766 + -0.3
2,098,769 - -0.6
2,098,769 - -0.6
2,098,776 - -0.0
2,098,778 - -2.5
2,098,782 - -2.0
2,098,784 + -0.4
2,098,793 + 0.4
2,098,801 - -2.7
2,098,802 + -1.8
2,098,803 - -3.5
2,098,805 - -0.3
2,098,809 - -3.1
2,098,811 + -2.2
2,098,813 + -0.2
2,098,818 - -1.3
2,098,819 + -0.7
2,098,822 - -0.2
2,098,822 - -3.8
2,098,824 + -0.9
2,098,824 - -2.3
2,098,824 - -1.5
2,098,828 - -0.6
2,098,830 + -2.7
2,098,831 - -0.6
2,098,831 - -2.2
2,098,832 + -0.3
2,098,833 - -0.9
2,098,854 - -4.5
2,098,859 + -2.8
2,098,862 + -0.6
2,098,899 - -2.7
2,098,900 - -1.7
2,098,903 + -1.7
2,098,904 - -0.8
2,098,908 + -2.1
2,099,023 - -1.6
2,099,028 - -2.6
2,099,030 + -0.2
2,099,035 + -0.8
2,099,041 - -2.6
2,099,042 + -4.3
2,099,042 + -1.3
2,099,042 - -2.0
2,099,045 - -0.7
2,099,048 - -0.1
2,099,049 + -1.8
2,099,055 + -2.4
2,099,059 + -3.2
2,099,064 - -1.5
2,099,064 - -1.2
2,099,067 + -0.6
2,099,070 - -1.2
2,099,089 - -1.3
2,099,114 - 0.3
2,099,116 - -1.6
2,099,127 + -2.5
2,099,129 - -2.8
2,099,146 - -0.5
2,099,156 + -1.5
2,099,159 - -2.0
2,099,165 - -3.0
2,099,169 - -1.8
2,099,171 - -0.8
2,099,171 - -2.0
2,099,177 - -0.2
2,099,178 - -1.3
2,099,189 + -1.3
2,099,193 + -0.3
2,099,207 - -0.4
2,099,218 + -1.3
2,099,219 - -1.2
2,099,220 + -1.8
2,099,222 - -0.6
2,099,225 + -0.3
2,099,235 - -0.3
2,099,237 + -0.9
2,099,243 - -1.6
2,099,244 + -2.1
2,099,247 + -1.0
2,099,249 + -3.2
2,099,294 - -1.2
2,099,305 - -0.4
2,099,308 + -2.4
2,099,309 + -2.6
2,099,314 - 0.4
2,099,332 + -2.1
2,099,332 - -3.4
2,099,351 - -1.6
2,099,356 + -4.0
2,099,365 + -2.6
2,099,380 - 1.1
2,099,380 - -0.2
2,099,382 - 0.1
2,099,384 - -0.9
2,099,385 + -0.6
2,099,387 + -0.9
2,099,389 - -2.0
2,099,392 - 1.0
2,099,392 + -1.4
2,099,396 + -1.4
2,099,398 + -3.1
2,099,404 - -0.3
2,099,405 + -1.8
2,099,413 - -2.8
2,099,417 + 0.9
2,099,418 + -2.3
2,099,420 - -0.1
2,099,425 - -2.6
2,099,426 + 0.1
2,099,428 + -0.9
2,099,432 + -1.4
2,099,435 - -0.4
2,099,440 - 0.9
2,099,441 - 0.1
2,099,441 - -1.3
2,099,446 - -0.5
2,099,449 + -3.1
2,099,461 - -0.0
2,099,466 - -0.7
2,099,472 + -1.4
2,099,484 - -0.6
2,099,486 + 0.4
2,099,487 + 0.0
2,099,488 - 1.2
2,099,489 + -1.4
2,099,520 + -1.5
2,099,532 - -0.2
2,099,545 + -2.2
2,099,555 - -0.4
2,099,563 - -2.9
2,099,565 + 0.2
2,099,566 + -0.8
2,099,566 - -2.9
2,099,571 - -1.1
2,099,574 + 0.3
2,099,575 - -1.8
2,099,575 + -2.0
2,099,576 - 0.6
2,099,580 + -1.5
2,099,582 + -1.0
2,099,584 + -0.4
2,099,587 - -0.3
2,099,598 - -1.4
2,099,599 - -1.1
2,099,600 + -0.2
2,099,603 - -0.1
2,099,612 - 0.3
2,099,613 + -1.8
2,099,620 - -1.8
2,099,621 - -2.6
2,099,622 + -1.4