Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_869

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_868: 9236 - K14782 AATF, BFR2 protein AATF/BFR2, at 2074153 to 2076198 9236 mRNA_869: 9237 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 2076374 to 2078080 9237 mRNA_870: 9238 - KOG0679 Actin-related protein - Arp4p/Act3p, at 2078239 to 2080203 9238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,076,157 + -0.5
2,076,276 - -2.9
2,076,289 - 0.8
2,076,296 + 1.1
2,076,299 - -1.8
2,076,428 + -2.1
2,076,570 - 9237 mRNA_869 0.11 -1.2
2,076,612 + 9237 mRNA_869 0.14 -2.7
2,076,766 + 9237 mRNA_869 0.23 -0.9
2,076,900 + 9237 mRNA_869 0.31 -1.6
2,076,930 + 9237 mRNA_869 0.33 -3.7
2,077,211 + 9237 mRNA_869 0.49 -1.8
2,077,241 - 9237 mRNA_869 0.51 -1.4
2,077,343 + 9237 mRNA_869 0.57 0.5
2,077,656 - 9237 mRNA_869 0.75 -1.4
2,077,663 + 9237 mRNA_869 0.76 -1.4
2,077,814 - 9237 mRNA_869 0.84 -1.8
2,077,830 + 9237 mRNA_869 0.85 -2.1
2,078,189 - -4.7
2,078,249 - -0.9
2,078,355 + 0.0