Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_841

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_840: 9208 - BLAST protein of unknown function DUF1746, fungi [Rhodo..., at 2012054 to 2014320 9208 mRNA_841: 9209 - HMMPfam-Kinetochore protein CHL4 like-PF05238, at 2015079 to 2016824 9209 mRNA_842: 9210 - K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C, at 2017020 to 2018936 9210

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,014,352 - -3.4
2,014,365 - -2.0
2,014,382 - -3.5
2,014,460 + -0.8
2,014,514 - 1.0
2,014,537 - -0.6
2,014,555 + -0.9
2,014,573 - -0.2
2,014,573 + -0.9
2,014,622 + -0.3
2,014,652 + -2.2
2,014,774 + -0.8
2,014,953 + 0.4
2,014,959 - -0.7
2,014,975 + -0.7
2,015,100 + 1.4
2,015,536 + 9209 mRNA_841 0.26 -0.4
2,015,545 - 9209 mRNA_841 0.27 0.7
2,015,819 - 9209 mRNA_841 0.42 -2.4
2,015,822 + 9209 mRNA_841 0.43 -0.3
2,016,432 - 9209 mRNA_841 0.77 -1.8
2,016,562 - 9209 mRNA_841 0.85 1.6
2,016,722 - -0.3
2,016,727 + 0.2
2,016,864 - -2.1
2,016,869 - -1.4