Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_795

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_794: 9162 - K14834 NOC3 nucleolar complex protein 3, at 1887871 to 1891135 9162 mRNA_795: 9163 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1891240 to 1893546 9163 mRNA_796: 9164 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1893932 to 1897116 9164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,891,141 - -1.6
1,891,173 - -3.1
1,891,500 + 9163 mRNA_795 0.11 -0.5
1,891,852 - 9163 mRNA_795 0.27 -0.2
1,892,419 - 9163 mRNA_795 0.51 -0.8
1,892,520 - 9163 mRNA_795 0.55 -0.5
1,892,664 - 9163 mRNA_795 0.62 -0.4
1,893,133 - 9163 mRNA_795 0.82 -1.8
1,893,153 + 9163 mRNA_795 0.83 -2.5
1,893,280 + 9163 mRNA_795 0.88 -2.1
1,893,292 + 9163 mRNA_795 0.89 -1.3
1,893,444 - -0.4
1,893,449 + 0.1
1,893,465 + -0.4
1,893,476 - -0.6
1,893,477 + -3.1
1,893,573 + 1.0
1,893,576 + -1.4
1,893,576 - -2.1
1,893,576 - -2.2
1,893,592 + -1.9
1,893,593 - -3.6
1,893,594 - -2.5
1,893,605 + -0.7
1,893,606 - -1.3
1,893,651 + -3.6
1,893,662 - 0.0
1,893,666 - -0.7
1,893,671 - -1.5
1,893,694 - -1.3
1,893,709 - -1.5
1,893,724 + 0.4
1,893,726 - -0.1
1,893,735 + 1.1
1,893,739 - -0.4
1,893,745 + -0.5
1,893,748 + -1.0
1,893,750 + -0.9
1,893,757 - -0.6
1,893,758 + -3.4
1,893,761 + -1.4
1,893,763 - -1.2
1,893,764 + 0.8
1,893,765 + -1.2
1,893,765 - -1.2
1,893,773 - -0.5
1,893,780 + -4.0
1,893,784 - 0.0
1,893,810 + -2.5
1,893,873 + 0.1
1,893,889 + -1.8
1,893,890 - -0.9
1,893,892 - -0.6
1,893,917 + 1.1
1,893,919 + -1.1
1,893,920 + 0.5
1,893,926 - 1.8
1,893,942 + -1.5
1,893,954 + -2.6
1,894,005 + -1.2
1,894,043 + -0.5
1,894,055 + 0.8
1,894,083 + 0.3
1,894,091 + -1.6
1,894,205 - -2.1
1,894,252 + 9164 mRNA_796 0.10 -1.3
1,894,479 - 9164 mRNA_796 0.17 -0.1
1,894,502 - 9164 mRNA_796 0.18 -3.1