Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_755

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_754: 9122 - KOG0143 Iron/ascorbate family oxidoreductases, at 1800031 to 1801635 9122 mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1802135 to 1802908 9123 mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1802998 to 1803902 9124

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,801,231 + 9122 mRNA_754 0.75 0.3
1,801,588 + -1.9
1,801,687 + -3.9
1,801,701 - -1.2
1,801,845 + -2.0
1,801,848 - -3.9
1,801,849 + -4.0
1,801,938 + -1.1
1,802,277 - 9123 mRNA_755 0.18 0.8
1,802,279 + 9123 mRNA_755 0.19 -1.4
1,802,545 - 9123 mRNA_755 0.53 -1.1
1,802,721 + 9123 mRNA_755 0.76 1.4
1,802,852 - -2.3
1,802,863 + -0.3
1,802,895 + 0.3
1,803,020 - 0.7
1,803,051 - 1.8
1,803,618 + 9124 mRNA_756 0.69 0.9
1,803,638 + 9124 mRNA_756 0.71 -0.3
1,803,727 + 9124 mRNA_756 0.81 -1.0
1,803,756 + 9124 mRNA_756 0.84 -2.5
1,803,880 + -1.9