Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_744

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1776255 to 1777416 9111 mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1777917 to 1780253 9112 mRNA_745: 9113 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 1780451 to 1782779 9113

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,777,089 - 9111 mRNA_743 0.72 -2.6
1,777,454 + 0.7
1,777,529 - -3.8
1,777,560 + 0.1
1,777,791 - -1.3
1,777,793 + 0.0
1,777,802 + 0.1
1,777,811 + -1.3
1,777,812 + -1.7
1,777,814 - -1.6
1,777,816 + 0.1
1,777,821 - -0.5
1,777,821 - -0.0
1,777,821 - -4.8
1,777,828 + -1.1
1,777,832 + -0.7
1,777,841 + 0.0
1,777,865 - -3.5
1,777,890 + -2.7
1,777,970 + -0.4
1,777,981 + -0.1
1,778,001 - -0.4
1,778,043 - -3.8
1,778,197 - 9112 mRNA_744 0.12 -2.3
1,778,321 - 9112 mRNA_744 0.17 -0.4
1,779,024 - 9112 mRNA_744 0.47 -2.2
1,779,082 + 9112 mRNA_744 0.50 -0.8
1,779,875 - 9112 mRNA_744 0.84 0.3
1,780,114 + -2.2
1,780,117 - -1.7
1,780,375 + -1.7
1,780,573 + -1.6
1,780,575 - -1.5
1,780,707 + 9113 mRNA_745 0.11 -0.8
1,780,714 + 9113 mRNA_745 0.11 -1.0
1,780,784 - 9113 mRNA_745 0.14 -0.8
1,780,866 - 9113 mRNA_745 0.18 -4.4