Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_708

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1689670 to 1691771 9075 mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1692060 to 1693397 9076

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,691,113 - 9075 mRNA_707 0.69 -1.5
1,691,121 - 9075 mRNA_707 0.69 -3.1
1,691,491 + 9075 mRNA_707 0.87 -1.4
1,691,503 - 9075 mRNA_707 0.87 -2.6
1,691,504 + 9075 mRNA_707 0.87 -1.1
1,691,772 + -0.9
1,692,019 + -2.1
1,692,040 + -2.7
1,692,200 + 9076 mRNA_708 0.10 0.4
1,692,290 + 9076 mRNA_708 0.17 1.0
1,692,340 + 9076 mRNA_708 0.21 -1.7
1,692,481 + 9076 mRNA_708 0.31 -2.2
1,692,484 - 9076 mRNA_708 0.32 -1.1
1,692,517 - 9076 mRNA_708 0.34 -2.4
1,692,726 - 9076 mRNA_708 0.50 -5.6
1,692,747 + 9076 mRNA_708 0.51 -1.7
1,692,748 + 9076 mRNA_708 0.51 -2.0
1,692,797 - 9076 mRNA_708 0.55 -1.3
1,692,936 + 9076 mRNA_708 0.65 -1.8
1,692,944 + 9076 mRNA_708 0.66 -2.3
1,693,075 - 9076 mRNA_708 0.76 0.7
1,693,203 - 9076 mRNA_708 0.85 -1.6
1,693,206 - 9076 mRNA_708 0.86 -0.0
1,693,206 + 9076 mRNA_708 0.86 -1.0
1,693,810 - -1.6
1,693,925 - -1.5
1,693,943 + -1.9
1,694,054 - -1.5
1,694,065 - 0.1
1,694,096 + 0.7
1,694,105 - -0.1
1,694,131 + -1.4
1,694,133 - -1.0
1,694,140 - -2.5