Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_666

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1602722 to 1607021 9033 mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1607082 to 1608088 9034 mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1608200 to 1608918 9035

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,606,306 + 9033 mRNA_665 0.83 -1.0
1,607,148 - -1.6
1,607,636 + 9034 mRNA_666 0.55 0.9
1,607,775 - 9034 mRNA_666 0.69 0.6
1,607,926 - 9034 mRNA_666 0.84 -1.7
1,608,059 - -1.3
1,608,085 + -0.3
1,608,089 - -1.7
1,608,117 + -0.9
1,608,270 + 0.4
1,608,373 - 9035 mRNA_667 0.24 -0.4
1,608,394 - 9035 mRNA_667 0.27 -2.2
1,608,398 - 9035 mRNA_667 0.28 -1.1
1,608,402 - 9035 mRNA_667 0.28 -2.3
1,608,412 + 9035 mRNA_667 0.29 1.4
1,608,473 + 9035 mRNA_667 0.38 -1.0
1,608,541 - 9035 mRNA_667 0.47 0.0
1,608,545 - 9035 mRNA_667 0.48 -0.0
1,608,557 + 9035 mRNA_667 0.50 -1.0
1,608,694 - 9035 mRNA_667 0.69 -0.9
1,609,010 + -0.2
1,609,051 + 0.7