Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_664

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_663: 9031 - SUPERFAMILY--SSF103196, at 1595693 to 1596287 9031 mRNA_664: 9032 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197, at 1596651 to 1602461 9032 mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1602722 to 1607021 9033

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,595,742 - -1.6
1,596,382 - -1.2
1,596,524 + -1.4
1,596,656 - -1.2
1,596,918 + -2.0
1,597,061 + -2.0
1,597,380 + 9032 mRNA_664 0.13 0.1
1,597,499 - 9032 mRNA_664 0.15 -2.4
1,597,605 - 9032 mRNA_664 0.16 -2.6
1,597,791 - 9032 mRNA_664 0.20 -1.4
1,597,821 + 9032 mRNA_664 0.20 -1.1
1,597,976 + 9032 mRNA_664 0.23 0.1
1,598,214 + 9032 mRNA_664 0.27 -2.4
1,598,264 + 9032 mRNA_664 0.28 -3.3
1,598,425 + 9032 mRNA_664 0.31 1.0
1,598,527 - 9032 mRNA_664 0.32 0.1
1,598,596 - 9032 mRNA_664 0.33 -0.9
1,598,659 - 9032 mRNA_664 0.35 -1.4
1,598,968 - 9032 mRNA_664 0.40 -1.4
1,598,987 + 9032 mRNA_664 0.40 -3.3
1,599,132 - 9032 mRNA_664 0.43 -1.1
1,599,156 - 9032 mRNA_664 0.43 -2.9
1,599,574 + 9032 mRNA_664 0.50 -0.2
1,599,988 + 9032 mRNA_664 0.57 -1.6
1,600,893 - 9032 mRNA_664 0.73 0.6
1,600,893 + 9032 mRNA_664 0.73 -1.4
1,600,902 + 9032 mRNA_664 0.73 -0.1
1,602,088 - -0.3
1,602,184 - -3.5
1,602,199 - -0.2
1,602,214 + -0.4
1,602,226 + -1.6
1,602,239 + -2.6
1,602,525 - -3.3
1,602,662 - -0.8
1,602,672 + -0.0
1,602,674 + -2.1
1,602,932 + -0.1