Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_641

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1536476 to 1538269 9008 mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1538392 to 1544328 9009 mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1544667 to 1546033 9010

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,537,748 - 9008 mRNA_640 0.71 -1.0
1,538,057 - 9008 mRNA_640 0.88 -1.3
1,538,181 - -1.4
1,538,200 + -2.0
1,538,326 + -2.2
1,538,364 + 1.5
1,538,365 + -1.4
1,538,647 - -1.4
1,538,654 + -0.9
1,539,491 + 9009 mRNA_641 0.19 -2.2
1,539,820 - 9009 mRNA_641 0.24 -1.1
1,540,100 + 9009 mRNA_641 0.29 -0.8
1,541,550 - 9009 mRNA_641 0.53 -1.1
1,541,557 + 9009 mRNA_641 0.53 -2.5
1,541,593 - 9009 mRNA_641 0.54 -0.4
1,541,704 - 9009 mRNA_641 0.56 -0.7
1,541,715 - 9009 mRNA_641 0.56 -1.2
1,541,726 - 9009 mRNA_641 0.56 -0.9
1,541,873 - 9009 mRNA_641 0.59 1.0
1,542,030 + 9009 mRNA_641 0.61 -3.8
1,542,131 - 9009 mRNA_641 0.63 -1.5
1,542,383 - 9009 mRNA_641 0.67 -0.6
1,542,649 + 9009 mRNA_641 0.72 -2.3
1,543,071 + 9009 mRNA_641 0.79 -1.5
1,543,523 + 9009 mRNA_641 0.86 -0.7
1,543,979 - -1.4
1,544,004 - -1.5
1,544,290 - -0.6
1,544,303 + -1.6
1,544,317 + 0.5
1,544,333 - -1.0
1,544,412 - -2.7
1,544,545 + -1.5
1,544,583 - -0.1
1,544,709 + -1.3