Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_640

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1534937 to 1536294 9007 mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1536476 to 1538269 9008 mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1538392 to 1544328 9009

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,535,598 + 9007 mRNA_639 0.49 -2.7
1,535,710 - 9007 mRNA_639 0.57 -1.7
1,535,717 - 9007 mRNA_639 0.57 -0.2
1,535,724 + 9007 mRNA_639 0.58 -1.3
1,535,750 - 9007 mRNA_639 0.60 -1.3
1,535,833 - 9007 mRNA_639 0.66 -2.9
1,535,849 + 9007 mRNA_639 0.67 -1.2
1,535,859 - 9007 mRNA_639 0.68 0.7
1,535,870 + 9007 mRNA_639 0.69 0.7
1,536,177 - -1.1
1,536,441 - -1.6
1,536,748 - 9008 mRNA_640 0.15 0.0
1,536,874 - 9008 mRNA_640 0.22 0.0
1,537,121 - 9008 mRNA_640 0.36 -1.1
1,537,748 - 9008 mRNA_640 0.71 -1.0
1,538,057 - 9008 mRNA_640 0.88 -1.3
1,538,181 - -1.4
1,538,200 + -2.0
1,538,326 + -2.2
1,538,364 + 1.5
1,538,365 + -1.4
1,538,647 - -1.4
1,538,654 + -0.9