Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_619

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_618: 8986 - HMMPfam-PX domain-PF00787,ProSiteProfiles-PX domain profile.-PS50195,SUPERFAMILY--SSF64268, at 1482898 to 1485797 8986 mRNA_619: 8987 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1486682 to 1488921 8987 mRNA_620: 8988 - K17742 SOU1 sorbose reductase, at 1489486 to 1490787 8988

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,485,780 + -0.2
1,485,784 + -1.5
1,485,889 - -1.8
1,485,920 + -0.0
1,485,925 - -1.0
1,485,937 + -4.2
1,486,062 + 0.0
1,486,075 - -2.0
1,486,097 + 0.4
1,486,115 - -0.3
1,486,116 + -0.5
1,486,116 + -1.8
1,486,117 + -3.4
1,486,117 - -3.5
1,486,117 + -5.1
1,486,125 - -1.2
1,486,138 - -0.3
1,486,146 - -1.4
1,486,149 - 0.9
1,486,150 + -1.6
1,486,151 - -1.0
1,486,152 + -2.6
1,486,152 + -0.5
1,486,173 - -1.3
1,486,177 - -0.2
1,486,183 - -1.1
1,486,189 - -1.1
1,486,192 - -0.5
1,486,194 - -0.5
1,486,197 + -0.7
1,486,200 + -2.8
1,486,202 + -1.3
1,486,224 - -1.9
1,486,236 - -1.0
1,486,241 + -1.3
1,486,256 - -0.3
1,486,259 - -1.2
1,486,274 - -4.6
1,486,275 + -1.9
1,486,276 + -0.3
1,486,279 + -2.3
1,486,279 + -0.8
1,486,280 - -2.1
1,486,283 + -2.4
1,486,286 - 0.0
1,486,291 + -3.0
1,486,295 + -3.0
1,486,297 + -2.9
1,486,303 - -3.5
1,486,328 - -2.1
1,486,331 - -3.8
1,486,337 - -3.2
1,486,337 + -1.2
1,486,337 + -0.1
1,486,362 - -0.4
1,486,364 + -1.5
1,486,374 - -0.3
1,486,375 - 0.3
1,486,383 + 0.3
1,486,385 - 1.5
1,486,385 - -3.3
1,486,395 + -0.8
1,486,664 - 2.1
1,486,664 + 1.1
1,487,092 - 8987 mRNA_619 0.18 -2.0
1,487,525 - 8987 mRNA_619 0.38 -1.5
1,487,746 - 8987 mRNA_619 0.47 -3.5
1,487,798 - 8987 mRNA_619 0.50 -0.7
1,487,807 - 8987 mRNA_619 0.50 -2.4
1,487,932 - 8987 mRNA_619 0.56 -0.9
1,488,547 - 8987 mRNA_619 0.83 -0.7
1,488,706 - -1.8
1,488,956 - -1.0
1,489,180 - -0.4
1,489,194 + -4.5
1,489,233 + -2.2
1,489,258 - -1.4
1,489,273 - -2.4
1,489,276 + -3.0
1,489,280 + -0.9
1,489,285 - -2.2
1,489,290 + -2.0
1,489,299 + -0.5
1,489,304 - 0.5
1,489,312 + -1.2
1,489,312 + -0.7
1,489,417 + -2.9
1,489,433 - -1.7
1,489,446 - 0.7
1,489,447 + -0.7
1,489,465 + -1.9
1,489,469 + 1.6
1,489,578 - -1.8
1,489,595 + -2.8
1,489,595 + -0.6
1,489,748 + 8988 mRNA_620 0.20 -1.5
1,489,882 - 8988 mRNA_620 0.30 -0.3
1,489,889 + 8988 mRNA_620 0.31 -0.1