Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_609

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_608: 8976 - K09490 HSPA5, BIP heat shock 70kDa protein 5, at 1462266 to 1464196 8976 mRNA_609: 8977 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 1464752 to 1468761 8977 mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1469039 to 1470636 8978

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,464,660 + -2.1
1,464,661 - -1.6
1,464,675 - -2.8
1,464,688 - -1.3
1,464,713 + -1.8
1,464,723 + -1.6
1,464,833 - -0.7
1,464,840 + -2.0
1,464,856 + -2.6
1,464,985 + -3.0
1,464,988 + -0.7
1,465,289 + 8977 mRNA_609 0.13 -2.2
1,465,587 + 8977 mRNA_609 0.21 -2.5
1,465,733 - 8977 mRNA_609 0.24 -2.8
1,465,844 - 8977 mRNA_609 0.27 0.2
1,465,972 + 8977 mRNA_609 0.30 0.8
1,466,585 - 8977 mRNA_609 0.46 0.1
1,466,599 + 8977 mRNA_609 0.46 -2.8
1,466,710 - 8977 mRNA_609 0.49 -0.3
1,466,728 + 8977 mRNA_609 0.49 -1.4
1,466,908 + 8977 mRNA_609 0.54 -2.8
1,467,458 - 8977 mRNA_609 0.67 -0.3
1,467,765 - 8977 mRNA_609 0.75 -0.5
1,467,900 + 8977 mRNA_609 0.79 -2.4
1,467,936 + 8977 mRNA_609 0.79 -1.4
1,468,044 - 8977 mRNA_609 0.82 -1.1
1,468,181 + 8977 mRNA_609 0.86 -1.6
1,468,356 - 8977 mRNA_609 0.90 -1.1
1,468,610 - 0.1
1,468,634 + -0.3
1,468,634 - -2.0
1,468,654 + -2.8
1,468,727 - -0.9
1,468,764 + 1.3
1,468,791 + -1.1
1,468,794 + -0.1
1,468,799 + -1.8
1,468,922 - -2.3
1,468,932 - -1.4
1,468,941 - -3.6
1,468,943 + -0.4
1,468,948 + -1.0
1,468,957 - -1.3