Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_593

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_592: 8960 - K10747 LIG1 DNA ligase 1, at 1418540 to 1422145 8960 mRNA_593: 8961 - K18469 TBC1D5 TBC1 domain family member 5, at 1422480 to 1425082 8961 mRNA_594: 8962 - K16261 YAT yeast amino acid transporter, at 1425721 to 1428613 8962

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,421,866 - -0.8
1,422,188 + -0.9
1,422,287 + -3.2
1,422,306 - -0.5
1,422,735 + -2.2
1,422,753 - 8961 mRNA_593 0.10 -1.6
1,422,909 - 8961 mRNA_593 0.16 -1.9
1,423,050 - 8961 mRNA_593 0.22 -1.5
1,423,832 + 8961 mRNA_593 0.52 -3.2
1,424,718 - 8961 mRNA_593 0.86 -3.8
1,424,829 - -3.5
1,424,829 - -2.2
1,424,917 + -0.5
1,424,968 - -1.7
1,424,975 - -1.9
1,425,000 - -1.9
1,425,050 - -2.3
1,425,062 - -0.7
1,425,065 + -1.9
1,425,066 - -0.7
1,425,077 - -1.7
1,425,093 - -2.7
1,425,102 + -1.2
1,425,106 - -1.4
1,425,122 - -2.6
1,425,124 - -2.4
1,425,124 + 1.0
1,425,125 + -2.4
1,425,138 - -2.5
1,425,140 - -1.5
1,425,155 - -0.7
1,425,162 + -0.8
1,425,177 - 0.1
1,425,177 - -1.3
1,425,177 - -0.1
1,425,178 + -2.1
1,425,179 + -1.7
1,425,179 + 0.0
1,425,181 + -0.4
1,425,195 - -0.5
1,425,202 - -2.4
1,425,232 - -0.1
1,425,239 + -0.5
1,425,249 - -1.0
1,425,268 - -1.8
1,425,268 - -2.9
1,425,277 + -3.5
1,425,280 + -2.8
1,425,290 - 0.9
1,425,290 - -3.8
1,425,294 - -0.5
1,425,295 - 0.1
1,425,303 - -2.9
1,425,308 + 0.1
1,425,313 - 0.4
1,425,318 - 1.6
1,425,320 - -1.6
1,425,322 - -0.2
1,425,323 + -0.1
1,425,323 + -1.3
1,425,327 + -0.6
1,425,350 + -2.0
1,425,395 - 1.3
1,425,408 - 2.4
1,425,435 + -3.2
1,425,457 - -0.2
1,425,462 + -1.1
1,425,576 + -3.6
1,425,588 - -1.5
1,425,592 + -3.4
1,425,601 + -2.5
1,425,607 - -3.2
1,425,611 - -1.0
1,425,611 + -1.5
1,425,612 - -2.2
1,425,613 + -0.4
1,425,629 - -2.2
1,425,629 - -1.7
1,425,629 - 0.3
1,425,635 + -1.3
1,425,635 - -0.6
1,425,638 + -3.3
1,425,646 + -1.1
1,425,647 + -2.2
1,425,649 + -0.1
1,425,652 - -1.2
1,425,653 + -0.9
1,425,660 + -0.3
1,425,668 + 0.6
1,425,670 - 0.6
1,425,671 + -1.8
1,425,672 - -2.0
1,425,697 + -4.8
1,425,775 - -0.9
1,425,777 - -0.4
1,425,795 - -0.7
1,425,806 + -3.1
1,425,822 - -2.5
1,425,957 + -2.9
1,425,958 - -2.2
1,425,958 - -2.9
1,425,959 + 0.2
1,425,963 - -3.1