Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_539

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_538: 8906 - Hypothetical Protein, at 1276720 to 1277120 8906 mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1277629 to 1279340 8907 mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1279854 to 1286363 8908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,276,763 + 8906 mRNA_538 0.11 -0.5
1,276,870 + 8906 mRNA_538 0.37 -1.7
1,277,347 - 0.5
1,277,350 - 0.1
1,277,351 - -0.6
1,277,352 + 1.0
1,277,400 - -1.7
1,277,421 - -1.2
1,277,437 - -1.3
1,277,437 - -0.2
1,277,438 - -1.6
1,277,442 - -1.9
1,277,444 + -0.5
1,277,457 - 0.2
1,277,461 + -1.8
1,277,463 + -2.2
1,277,467 + -2.6
1,277,467 + -0.8
1,277,468 - 0.3
1,277,470 + -1.2
1,277,472 - -1.9
1,277,474 - -0.8
1,277,480 - -0.6
1,277,509 - -2.7
1,277,515 - -3.7
1,277,517 - 0.2
1,277,535 + -1.0
1,277,543 - -1.8
1,277,640 + -1.6
1,277,655 - -1.2
1,277,675 + -0.1
1,277,675 - -2.0
1,277,676 + -1.5
1,277,680 - -2.9
1,277,682 + 0.7
1,277,692 + 0.7
1,277,800 - 2.3
1,277,812 - 8907 mRNA_539 0.11 -0.7
1,277,822 - 8907 mRNA_539 0.11 0.5
1,277,825 - 8907 mRNA_539 0.11 0.3
1,277,834 - 8907 mRNA_539 0.12 0.7
1,277,968 - 8907 mRNA_539 0.20 -1.8
1,278,003 + 8907 mRNA_539 0.22 -0.7
1,278,146 + 8907 mRNA_539 0.30 1.6
1,278,149 - 8907 mRNA_539 0.30 -0.4
1,278,848 - 8907 mRNA_539 0.71 -2.4
1,278,862 - 8907 mRNA_539 0.72 -0.1
1,278,865 - 8907 mRNA_539 0.72 -0.1
1,279,217 + -0.6
1,279,295 - -0.8
1,279,297 + -0.4
1,279,454 + -3.6
1,279,461 - -3.4
1,279,472 + -3.0
1,279,478 - -1.5
1,279,479 + -0.1
1,279,531 - -1.2
1,279,609 + -2.8
1,279,610 - -0.3
1,279,631 - -2.0
1,279,768 + -1.3
1,279,775 - 0.9
1,279,785 - -1.2
1,279,965 - -1.4
1,280,227 - -1.4