Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_536

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_535: 8903 - HMMPfam-Ribosomal protein S21-PF01165,TIGRFAM-S21p ribosomal protein S21-TIGR00030, at 1272701 to 1273396 8903 mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1273602 to 1274230 8904 mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1274632 to 1275903 8905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,272,695 - -1.6
1,273,538 - -2.4
1,273,543 - -0.9
1,273,545 + -1.2
1,273,546 + -2.6
1,273,549 - -0.3
1,273,551 + -1.6
1,273,682 + 8904 mRNA_536 0.13 -2.4
1,273,697 - 8904 mRNA_536 0.15 -2.5
1,273,697 - 8904 mRNA_536 0.15 -0.6
1,274,265 - -0.0
1,274,581 - -1.2
1,274,902 - 8905 mRNA_537 0.21 0.1