Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_517

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1227743 to 1229231 8884 mRNA_517: 8885 - K07508 ACAA2 acetyl-CoA acyltransferase 2, at 1229501 to 1231364 8885 mRNA_518: 8886 - HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473, at 1231693 to 1233306 8886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,228,996 + 8884 mRNA_516 0.84 -1.2
1,229,885 + 8885 mRNA_517 0.21 -1.1
1,230,070 - 8885 mRNA_517 0.31 -1.5
1,230,369 + 8885 mRNA_517 0.47 -2.4
1,230,931 - 8885 mRNA_517 0.77 -2.0
1,231,092 + 8885 mRNA_517 0.85 -1.2
1,231,229 + -3.0
1,231,243 + -3.5
1,231,344 - -2.2
1,231,355 - -2.4
1,231,362 - 0.3
1,231,385 - -2.5
1,231,387 - -0.8
1,231,505 - -2.0
1,231,512 + -0.1
1,231,514 + -1.3
1,231,514 - -0.6
1,231,516 + -2.8
1,231,517 - -1.5
1,231,527 - -0.6
1,231,528 - -2.0
1,231,543 + -0.3
1,231,552 + -1.0
1,231,981 - 8886 mRNA_518 0.18 0.0
1,232,126 + 8886 mRNA_518 0.27 -1.5