Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_503

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_502: 8870 - ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089, at 1193819 to 1194942 8870 mRNA_503: 8871 - Hypothetical Protein, at 1195207 to 1198729 8871 mRNA_504: 8872 - Hypothetical Protein, at 1199527 to 1200402 8872

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,194,256 - 8870 mRNA_502 0.39 -2.6
1,194,301 - 8870 mRNA_502 0.43 -3.0
1,194,407 - 8870 mRNA_502 0.52 -2.0
1,194,694 + 8870 mRNA_502 0.78 -2.4
1,194,826 + 8870 mRNA_502 0.90 -1.5
1,194,947 - -0.5
1,194,998 - -3.0
1,195,001 + -0.3
1,195,006 + -2.1
1,195,016 + -1.1
1,195,024 + -1.9
1,195,155 - -1.7
1,195,467 + -2.7
1,195,863 + 8871 mRNA_503 0.19 -1.0
1,196,034 - 8871 mRNA_503 0.23 -1.9
1,196,164 - 8871 mRNA_503 0.27 -2.1
1,196,344 + 8871 mRNA_503 0.32 -0.0
1,196,784 - 8871 mRNA_503 0.45 -2.7
1,197,069 - 8871 mRNA_503 0.53 0.1
1,197,070 + 8871 mRNA_503 0.53 1.8
1,197,087 + 8871 mRNA_503 0.53 -0.3
1,197,772 - 8871 mRNA_503 0.73 -1.5
1,197,776 - 8871 mRNA_503 0.73 -2.5
1,197,802 + 8871 mRNA_503 0.74 -2.1
1,197,967 + 8871 mRNA_503 0.78 0.2
1,198,233 - 8871 mRNA_503 0.86 -1.5
1,198,521 - 0.0
1,198,526 + -3.2
1,198,658 - -1.3
1,198,809 + 0.6
1,198,820 - -0.4
1,198,824 + 0.0
1,198,824 - 0.3
1,198,831 + 0.3
1,198,836 - -2.9
1,198,839 + -2.1
1,198,839 + -2.4
1,198,842 + -1.5
1,198,853 + 0.8
1,198,869 - -1.0
1,198,884 - -0.6
1,198,981 + -0.1
1,198,981 + -0.4
1,198,982 - -1.1
1,198,985 + -1.5
1,198,987 - -0.8
1,198,989 - -2.8
1,198,990 + -0.4
1,198,995 + -0.5
1,198,995 - -0.6
1,198,997 + -1.5
1,199,001 - -1.1
1,199,003 + -2.6
1,199,010 + -1.9
1,199,012 - 0.6
1,199,014 + -1.2
1,199,033 - -1.0
1,199,033 - -1.1
1,199,039 - -1.6
1,199,054 + -1.5
1,199,076 + -2.9
1,199,076 + -2.1
1,199,095 - -2.6
1,199,115 - 0.2
1,199,121 - -1.0
1,199,123 + -1.0
1,199,131 + -4.0
1,199,137 + -0.0
1,199,214 - -2.8
1,199,256 - -0.5
1,199,284 - -0.7
1,199,289 - -1.0
1,199,317 + -2.3
1,199,334 - -2.1
1,199,334 - -2.1
1,199,349 - -1.6
1,199,372 - -2.5
1,199,372 - -1.8
1,199,381 - 0.4
1,199,385 + -0.0
1,199,387 - -1.3
1,199,388 + 0.1
1,199,389 - -1.3
1,199,390 - -0.5
1,199,397 + -2.0
1,199,403 - 0.5
1,199,405 + -1.9
1,199,420 - -3.1
1,199,425 + -0.2
1,199,429 - 1.1
1,199,516 - -1.7
1,199,557 - -2.3
1,199,565 + -0.9
1,199,589 + -3.9
1,199,598 - -0.4
1,199,614 + -0.9
1,199,707 - 8872 mRNA_504 0.21 -1.3