Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_484

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_483: 8851 - KOG1339 Aspartyl protease, at 1150104 to 1151338 8851 mRNA_484: 8852 - Hypothetical Protein, at 1151977 to 1154074 8852 mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1154487 to 1156857 8853

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,150,978 - 8851 mRNA_483 0.71 -2.4
1,151,018 + 8851 mRNA_483 0.74 -1.7
1,151,120 - 8851 mRNA_483 0.82 -0.6
1,151,171 + 8851 mRNA_483 0.86 -1.1
1,151,301 - 0.1
1,151,308 + -2.4
1,151,338 + -2.6
1,151,422 + -0.3
1,151,428 - -2.4
1,151,450 - -2.3
1,151,450 + -0.8
1,151,452 + 0.2
1,151,453 + -0.5
1,151,460 - -0.7
1,151,472 + -0.7
1,151,484 + 0.9
1,151,492 + -0.0
1,151,506 - -0.5
1,151,506 - -1.6
1,151,524 - -2.1
1,151,526 + -1.7
1,151,546 - 1.5
1,151,546 - 0.5
1,151,599 + -2.0
1,151,634 - 1.3
1,151,775 + -1.5
1,152,216 + 8852 mRNA_484 0.11 -3.5
1,152,220 + 8852 mRNA_484 0.12 -1.7
1,152,391 + 8852 mRNA_484 0.20 -0.1
1,153,411 + 8852 mRNA_484 0.68 -0.2
1,153,513 - 8852 mRNA_484 0.73 0.2
1,153,516 + 8852 mRNA_484 0.73 -2.2
1,153,541 + 8852 mRNA_484 0.75 -2.7
1,153,645 - 8852 mRNA_484 0.80 -1.4
1,153,653 + 8852 mRNA_484 0.80 0.3
1,153,653 - 8852 mRNA_484 0.80 -1.6
1,153,681 - 8852 mRNA_484 0.81 -1.0
1,153,684 + 8852 mRNA_484 0.81 -2.0
1,153,687 - 8852 mRNA_484 0.82 -0.8
1,153,693 + 8852 mRNA_484 0.82 -2.8
1,153,709 - 8852 mRNA_484 0.83 -3.2
1,153,714 - 8852 mRNA_484 0.83 -1.6
1,153,718 + 8852 mRNA_484 0.83 -0.4
1,153,724 + 8852 mRNA_484 0.83 -0.9
1,153,731 - 8852 mRNA_484 0.84 -2.1
1,153,732 + 8852 mRNA_484 0.84 -0.2
1,153,735 - 8852 mRNA_484 0.84 -1.6
1,153,738 + 8852 mRNA_484 0.84 -1.0
1,153,748 - 8852 mRNA_484 0.84 -1.3
1,153,751 - 8852 mRNA_484 0.85 -3.6
1,153,753 - 8852 mRNA_484 0.85 -0.7
1,153,769 + 8852 mRNA_484 0.85 -0.2
1,153,771 + 8852 mRNA_484 0.86 -0.1
1,153,783 + 8852 mRNA_484 0.86 -3.6
1,153,795 - 8852 mRNA_484 0.87 -1.9
1,153,798 - 8852 mRNA_484 0.87 -0.9
1,153,804 + 8852 mRNA_484 0.87 -0.4
1,153,814 + 8852 mRNA_484 0.88 -1.5
1,153,814 + 8852 mRNA_484 0.88 -2.5
1,153,877 - 0.6
1,153,884 + -2.3
1,153,902 + -2.0
1,153,902 + -2.4
1,153,920 - -1.0
1,153,943 + -1.0
1,153,949 + 0.8
1,153,962 + -2.5
1,153,964 + -2.3
1,153,965 + -0.8
1,153,979 - -1.3
1,154,003 - 0.1
1,154,027 + -0.4
1,154,034 + -0.8
1,154,089 - -1.0
1,154,099 - 0.8
1,154,128 + 0.2
1,154,136 + -3.5
1,154,269 - -0.4
1,154,270 - -1.9
1,154,411 + -2.1
1,154,414 - -3.4
1,154,429 - -2.9
1,154,430 + 0.2
1,154,472 - -0.9
1,154,505 - -0.3
1,154,511 + -2.0
1,154,521 + -3.7
1,154,532 - -2.5
1,154,551 + -0.7
1,154,561 - -1.8
1,154,612 + -1.9
1,154,615 + -3.5
1,154,622 + -1.4
1,154,623 + -2.0
1,154,628 + -2.5
1,154,809 - 8853 mRNA_485 0.14 -2.5
1,154,863 - 8853 mRNA_485 0.16 -2.0
1,154,870 - 8853 mRNA_485 0.16 -0.3
1,154,909 + 8853 mRNA_485 0.18 -0.3