Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_439

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_438: 8806 - Hypothetical Protein, at 1015167 to 1016657 8806 mRNA_439: 8807 - KOG2246 Galactosyltransferases, at 1016964 to 1019320 8807 mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1020213 to 1022062 8808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,016,467 + 8806 mRNA_438 0.87 -1.4
1,016,476 + 8806 mRNA_438 0.88 0.3
1,016,592 - -0.8
1,016,593 + -2.3
1,016,593 + -2.9
1,016,593 - -1.2
1,016,596 - -1.3
1,016,671 + 0.3
1,016,869 + 0.3
1,016,903 + -3.3
1,016,904 + -0.5
1,016,906 + -1.3
1,017,046 - -0.4
1,017,140 + -0.9
1,017,346 - 8807 mRNA_439 0.16 -0.9
1,017,441 - 8807 mRNA_439 0.20 0.9
1,017,772 + 8807 mRNA_439 0.34 -1.5
1,017,866 - 8807 mRNA_439 0.38 -1.9
1,018,290 - 8807 mRNA_439 0.56 -0.3
1,018,340 + 8807 mRNA_439 0.58 -2.7
1,018,874 - 8807 mRNA_439 0.81 0.1
1,018,890 - 8807 mRNA_439 0.82 -0.7
1,019,043 + 8807 mRNA_439 0.88 0.3
1,019,187 + -0.9
1,019,318 - -0.6
1,019,320 - -1.9
1,019,347 + -2.6
1,019,347 - -1.9
1,019,352 + -4.2
1,019,371 - -2.7
1,019,391 - -3.0
1,019,455 - -1.8
1,019,488 - -1.3
1,019,492 + 0.9
1,019,496 + -1.3
1,019,497 + -0.5
1,019,502 + -2.4
1,019,518 + -2.9
1,019,632 - -3.3
1,019,634 + -0.3
1,019,636 + -1.5
1,019,643 + -2.3
1,019,662 + -0.8
1,019,686 + -0.4
1,019,700 + -1.7
1,019,711 + 0.1
1,019,729 - -1.4
1,019,729 - -0.7
1,019,731 + -1.5
1,019,735 + -0.1
1,019,736 + 0.5
1,019,743 - -0.3
1,019,766 - -0.5
1,019,778 + -1.5
1,019,881 + -2.6
1,019,886 + -1.5
1,019,891 - -3.2
1,019,900 + -2.2
1,019,907 - -1.6
1,019,907 + -0.2
1,019,909 + -0.8
1,019,981 - 1.0
1,019,982 + -1.2
1,019,982 + -0.4
1,019,982 + -2.3
1,020,071 - -0.7
1,020,097 + -0.9
1,020,242 - -0.1
1,020,258 + 0.8